Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 2549977..2550610 Replicon chromosome
Accession NZ_CP009010
Organism Xanthomonas citri pv. citri strain JX5

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag AMD20_RS11565 Protein ID WP_015463212.1
Coordinates 2549977..2550390 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4TWF0
Locus tag AMD20_RS11570 Protein ID WP_015463213.1
Coordinates 2550377..2550610 (-) Length 78 a.a.

Genomic Context

AMD20_RS11555AMD20_RS11560AMD20_RS11575AMD20_RS11585AMD20_RS11590AMD20_RS23400AMD20_RS11565AMD20_RS11570AMD20_RS11580
Location: 2545669..2547849 (2181 bp)
Type: Others
Protein ID: WP_011051394.1
Location: 2548058..2549572 (1515 bp)
Type: Others
Protein ID: WP_015463210.1
Location: 2550868..2551899 (1032 bp)
Type: Others
Protein ID: WP_040107627.1
Location: 2552882..2553457 (576 bp)
Type: Others
Protein ID: WP_011051400.1
Location: 2553438..2554487 (1050 bp)
Type: Others
Protein ID: WP_011051401.1
Location: 2549588..2549950 (363 bp)
Type: Others
Protein ID: WP_015463211.1
Location: 2549977..2550390 (414 bp)
Type: Toxin
Protein ID: WP_015463212.1
Location: 2550377..2550610 (234 bp)
Type: Antitoxin
Protein ID: WP_015463213.1
Location: 2552032..2552430 (399 bp)
Type: Others
Protein ID: WP_099521978.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD20_RS115552545669..2547849+2181WP_011051394.1TonB-dependent siderophore receptor-
AMD20_RS115602548058..2549572+1515WP_015463210.1conjugal transfer protein TraG N-terminal domain-containing protein-
AMD20_RS234002549588..2549950-363WP_015463211.1DUF3742 family protein-
AMD20_RS115652549977..2550390-414WP_015463212.1PIN domain-containing proteinToxin
AMD20_RS115702550377..2550610-234WP_015463213.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
AMD20_RS115752550868..2551899+1032WP_040107627.1DUF4917 family protein-
AMD20_RS115802552032..2552430-399WP_099521978.1hypothetical protein-
AMD20_RS115852552882..2553457+576WP_011051400.1sigma-70 family RNA polymerase sigma factor-
AMD20_RS115902553438..2554487+1050WP_011051401.1FecR domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-119)

Antitoxin

SpoVT-AbrB domain

(5-45)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15221.65 Da        Isoelectric Point: 6.3225

>T48065 WP_015463212.1 NZ_CP009010:c2550390-2549977 [Xanthomonas citri pv. citri]
MAAGKGKVFLDSNVVLYLLSEDAVKADGAEALLQRRPVISVQVLNEVTHVCVRKLKMGWDEVGQFLALVRSFCKIVPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYSEDMHHGLIIEESLSIRNPFNV

Download         Length: 414 bp

>T48065 NZ_CP009010:c2550390-2549977 [Xanthomonas citri pv. citri]
ATGGCCGCGGGTAAGGGCAAAGTGTTTCTCGACAGCAACGTGGTGCTCTACCTGCTGTCGGAGGATGCGGTGAAGGCGGA
CGGCGCGGAGGCATTGCTGCAGCGCAGGCCCGTCATCAGTGTGCAGGTGCTCAATGAAGTGACCCACGTCTGCGTTCGCA
AGCTCAAGATGGGCTGGGACGAAGTCGGGCAGTTCCTTGCGTTGGTGCGATCGTTCTGCAAGATAGTGCCTCTGACGGTC
GATGTTCACGACCGTGCGCGCCAGCTGGCGGAGCGGCACCAATTGTCGTTCTACGACGCGTGCATCGTGGCGGCGGCCGC
CATCGAAGGGTGCCAGACCCTCTACTCCGAAGACATGCACCACGGCCTCATCATCGAAGAGAGCCTGTCGATTCGGAACC
CGTTCAACGTCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8663.97 Da        Isoelectric Point: 8.7848

>AT48065 WP_015463213.1 NZ_CP009010:c2550610-2550377 [Xanthomonas citri pv. citri]
MQVAKWGNSLAVRLPSSLVEALELREGDDIEIVVDDPRLFAVRKKPGPEAMLERLRAFRGKLPADFKFNRDEANGRG

Download         Length: 234 bp

>AT48065 NZ_CP009010:c2550610-2550377 [Xanthomonas citri pv. citri]
ATGCAAGTCGCGAAGTGGGGTAACAGCCTGGCGGTGCGCCTGCCGTCCAGTCTGGTGGAAGCGCTGGAACTGCGCGAGGG
CGACGACATCGAGATCGTCGTCGATGATCCGCGATTGTTCGCGGTGCGCAAGAAGCCGGGTCCGGAGGCCATGTTGGAGC
GGCTGCGTGCCTTCCGGGGCAAGTTGCCCGCAGATTTCAAGTTCAACCGGGACGAGGCCAATGGCCGCGGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4TWF0

References