Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 2561142..2561775 Replicon chromosome
Accession NZ_CP009007
Organism Xanthomonas citri pv. citri strain MF20

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag AMD10_RS11575 Protein ID WP_015463212.1
Coordinates 2561142..2561555 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4TWF0
Locus tag AMD10_RS11580 Protein ID WP_015463213.1
Coordinates 2561542..2561775 (-) Length 78 a.a.

Genomic Context

AMD10_RS11565AMD10_RS11570AMD10_RS11585AMD10_RS11595AMD10_RS11600AMD10_RS23540AMD10_RS11575AMD10_RS11580AMD10_RS11590
Location: 2556834..2559014 (2181 bp)
Type: Others
Protein ID: WP_011051394.1
Location: 2559223..2560737 (1515 bp)
Type: Others
Protein ID: WP_015463210.1
Location: 2562033..2563064 (1032 bp)
Type: Others
Protein ID: WP_040107627.1
Location: 2564047..2564622 (576 bp)
Type: Others
Protein ID: WP_011051400.1
Location: 2564603..2565652 (1050 bp)
Type: Others
Protein ID: WP_011051401.1
Location: 2560753..2561115 (363 bp)
Type: Others
Protein ID: WP_015463211.1
Location: 2561142..2561555 (414 bp)
Type: Toxin
Protein ID: WP_015463212.1
Location: 2561542..2561775 (234 bp)
Type: Antitoxin
Protein ID: WP_015463213.1
Location: 2563197..2563595 (399 bp)
Type: Others
Protein ID: WP_099521978.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD10_RS115652556834..2559014+2181WP_011051394.1TonB-dependent siderophore receptor-
AMD10_RS115702559223..2560737+1515WP_015463210.1conjugal transfer protein TraG N-terminal domain-containing protein-
AMD10_RS235402560753..2561115-363WP_015463211.1DUF3742 family protein-
AMD10_RS115752561142..2561555-414WP_015463212.1PIN domain-containing proteinToxin
AMD10_RS115802561542..2561775-234WP_015463213.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
AMD10_RS115852562033..2563064+1032WP_040107627.1DUF4917 family protein-
AMD10_RS115902563197..2563595-399WP_099521978.1hypothetical protein-
AMD10_RS115952564047..2564622+576WP_011051400.1sigma-70 family RNA polymerase sigma factor-
AMD10_RS116002564603..2565652+1050WP_011051401.1FecR domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-119)

Antitoxin

SpoVT-AbrB domain

(5-45)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15221.65 Da        Isoelectric Point: 6.3225

>T48057 WP_015463212.1 NZ_CP009007:c2561555-2561142 [Xanthomonas citri pv. citri]
MAAGKGKVFLDSNVVLYLLSEDAVKADGAEALLQRRPVISVQVLNEVTHVCVRKLKMGWDEVGQFLALVRSFCKIVPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYSEDMHHGLIIEESLSIRNPFNV

Download         Length: 414 bp

>T48057 NZ_CP009007:c2561555-2561142 [Xanthomonas citri pv. citri]
ATGGCCGCGGGTAAGGGCAAAGTGTTTCTCGACAGCAACGTGGTGCTCTACCTGCTGTCGGAGGATGCGGTGAAGGCGGA
CGGCGCGGAGGCATTGCTGCAGCGCAGGCCCGTCATCAGTGTGCAGGTGCTCAATGAAGTGACCCACGTCTGCGTTCGCA
AGCTCAAGATGGGCTGGGACGAAGTCGGGCAGTTCCTTGCGTTGGTGCGATCGTTCTGCAAGATAGTGCCTCTGACGGTC
GATGTTCACGACCGTGCGCGCCAGCTGGCGGAGCGGCACCAATTGTCGTTCTACGACGCGTGCATCGTGGCGGCGGCCGC
CATCGAAGGGTGCCAGACCCTCTACTCCGAAGACATGCACCACGGCCTCATCATCGAAGAGAGCCTGTCGATTCGGAACC
CGTTCAACGTCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8663.97 Da        Isoelectric Point: 8.7848

>AT48057 WP_015463213.1 NZ_CP009007:c2561775-2561542 [Xanthomonas citri pv. citri]
MQVAKWGNSLAVRLPSSLVEALELREGDDIEIVVDDPRLFAVRKKPGPEAMLERLRAFRGKLPADFKFNRDEANGRG

Download         Length: 234 bp

>AT48057 NZ_CP009007:c2561775-2561542 [Xanthomonas citri pv. citri]
ATGCAAGTCGCGAAGTGGGGTAACAGCCTGGCGGTGCGCCTGCCGTCCAGTCTGGTGGAAGCGCTGGAACTGCGCGAGGG
CGACGACATCGAGATCGTCGTCGATGATCCGCGATTGTTCGCGGTGCGCAAGAAGCCGGGTCCGGAGGCCATGTTGGAGC
GGCTGCGTGCCTTCCGGGGCAAGTTGCCCGCAGATTTCAAGTTCAACCGGGACGAGGCCAATGGCCGCGGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4TWF0

References