Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) EcnAB/-
Location 4649878..4650239 Replicon chromosome
Accession NZ_CP008998
Organism Xanthomonas citri pv. citri strain MN12

Toxin (Protein)


Gene name EcnB Uniprot ID M4UGA1
Locus tag AMD14_RS20495 Protein ID WP_005914328.1
Coordinates 4649878..4650012 (-) Length 45 a.a.

Antitoxin (Protein)


Gene name EcnA Uniprot ID H8FG64
Locus tag AMD14_RS20500 Protein ID WP_003486606.1
Coordinates 4650087..4650239 (-) Length 51 a.a.

Genomic Context

AMD14_RS20510AMD14_RS20515AMD14_RS20520AMD14_RS20525AMD14_RS20530AMD14_RS20475AMD14_RS20480AMD14_RS20485AMD14_RS20490AMD14_RS20495AMD14_RS20500AMD14_RS20505
Location: 4651590..4652042 (453 bp)
Type: Others
Protein ID: WP_003486611.1
Location: 4652106..4652465 (360 bp)
Type: Others
Protein ID: WP_003486613.1
Location: 4652562..4653479 (918 bp)
Type: Others
Protein ID: WP_011052673.1
Location: 4653476..4654018 (543 bp)
Type: Others
Protein ID: WP_003486615.1
Location: 4654456..4655139 (684 bp)
Type: Others
Protein ID: WP_011052674.1
Location: 4645016..4646707 (1692 bp)
Type: Others
Protein ID: WP_015471463.1
Location: 4646899..4647933 (1035 bp)
Type: Others
Protein ID: WP_011052671.1
Location: 4647972..4649261 (1290 bp)
Type: Others
Protein ID: WP_015463705.1
Location: 4649442..4649651 (210 bp)
Type: Others
Protein ID: WP_003486601.1
Location: 4649878..4650012 (135 bp)
Type: Toxin
Protein ID: WP_005914328.1
Location: 4650087..4650239 (153 bp)
Type: Antitoxin
Protein ID: WP_003486606.1
Location: 4650346..4651269 (924 bp)
Type: Others
Protein ID: WP_005927745.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD14_RS204754645016..4646707-1692WP_015471463.1M20/M25/M40 family metallo-hydrolase-
AMD14_RS204804646899..4647933-1035WP_011052671.1MBL fold metallo-hydrolase-
AMD14_RS204854647972..4649261-1290WP_015463705.1tryptophan--tRNA ligase-
AMD14_RS204904649442..4649651-210WP_003486601.1CsbD family protein-
AMD14_RS204954649878..4650012-135WP_005914328.1entericidin A/B family lipoproteinToxin
AMD14_RS205004650087..4650239-153WP_003486606.1entericidin A/B family lipoproteinAntitoxin
AMD14_RS205054650346..4651269-924WP_005927745.1arginase-
AMD14_RS205104651590..4652042+453WP_003486611.1roadblock/LC7 domain-containing protein-
AMD14_RS205154652106..4652465+360WP_003486613.1hypothetical protein-
AMD14_RS205204652562..4653479+918WP_011052673.1hypothetical protein-
AMD14_RS205254653476..4654018+543WP_003486615.1GTPase-
AMD14_RS205304654456..4655139+684WP_011052674.1dTMP kinase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Entericidin A/B

(23-42)

Antitoxin

Entericidin A/B

(23-42)


Sequences

Toxin        


Download         Length: 45 a.a.        Molecular weight: 4459.32 Da        Isoelectric Point: 9.3487

>T48035 WP_005914328.1 NZ_CP008998:c4650012-4649878 [Xanthomonas citri pv. citri]
MKRAIVLLVLSMLSVGMLAGCNTVAGAGKDVQGAGEKVEDAARK

Download         Length: 135 bp

>T48035 NZ_CP008998:c4650012-4649878 [Xanthomonas citri pv. citri]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCGATGTTGTCGGTGGGAATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGCAGGGCGCTGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Antitoxin


Download         Length: 51 a.a.        Molecular weight: 5122.07 Da        Isoelectric Point: 8.7942

>AT48035 WP_003486606.1 NZ_CP008998:c4650239-4650087 [Xanthomonas citri pv. citri]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDMQGAGNKVEKTAEKCSDGKC

Download         Length: 153 bp

>AT48035 NZ_CP008998:c4650239-4650087 [Xanthomonas citri pv. citri]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCCGGCGC
CGGCAAGGACATGCAGGGTGCGGGCAACAAGGTCGAGAAAACGGCCGAAAAATGCAGCGACGGTAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A3G2W7U6

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A828YLX6

References