Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 2561148..2561781 Replicon chromosome
Accession NZ_CP008995
Organism Xanthomonas citri pv. citri strain NT17

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag AMD13_RS11590 Protein ID WP_015463212.1
Coordinates 2561148..2561561 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4TWF0
Locus tag AMD13_RS11595 Protein ID WP_015463213.1
Coordinates 2561548..2561781 (-) Length 78 a.a.

Genomic Context

AMD13_RS11580AMD13_RS11585AMD13_RS11600AMD13_RS11610AMD13_RS11615AMD13_RS23545AMD13_RS11590AMD13_RS11595AMD13_RS11605
Location: 2556840..2559020 (2181 bp)
Type: Others
Protein ID: WP_011051394.1
Location: 2559229..2560743 (1515 bp)
Type: Others
Protein ID: WP_015463210.1
Location: 2562039..2563070 (1032 bp)
Type: Others
Protein ID: WP_040107627.1
Location: 2564053..2564628 (576 bp)
Type: Others
Protein ID: WP_011051400.1
Location: 2564609..2565658 (1050 bp)
Type: Others
Protein ID: WP_011051401.1
Location: 2560759..2561121 (363 bp)
Type: Others
Protein ID: WP_015463211.1
Location: 2561148..2561561 (414 bp)
Type: Toxin
Protein ID: WP_015463212.1
Location: 2561548..2561781 (234 bp)
Type: Antitoxin
Protein ID: WP_015463213.1
Location: 2563203..2563601 (399 bp)
Type: Others
Protein ID: WP_099521978.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD13_RS115802556840..2559020+2181WP_011051394.1TonB-dependent siderophore receptor-
AMD13_RS115852559229..2560743+1515WP_015463210.1conjugal transfer protein TraG N-terminal domain-containing protein-
AMD13_RS235452560759..2561121-363WP_015463211.1DUF3742 family protein-
AMD13_RS115902561148..2561561-414WP_015463212.1PIN domain-containing proteinToxin
AMD13_RS115952561548..2561781-234WP_015463213.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
AMD13_RS116002562039..2563070+1032WP_040107627.1DUF4917 family protein-
AMD13_RS116052563203..2563601-399WP_099521978.1hypothetical protein-
AMD13_RS116102564053..2564628+576WP_011051400.1sigma-70 family RNA polymerase sigma factor-
AMD13_RS116152564609..2565658+1050WP_011051401.1FecR domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-119)

Antitoxin

SpoVT-AbrB domain

(5-45)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15221.65 Da        Isoelectric Point: 6.3225

>T48025 WP_015463212.1 NZ_CP008995:c2561561-2561148 [Xanthomonas citri pv. citri]
MAAGKGKVFLDSNVVLYLLSEDAVKADGAEALLQRRPVISVQVLNEVTHVCVRKLKMGWDEVGQFLALVRSFCKIVPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYSEDMHHGLIIEESLSIRNPFNV

Download         Length: 414 bp

>T48025 NZ_CP008995:c2561561-2561148 [Xanthomonas citri pv. citri]
ATGGCCGCGGGTAAGGGCAAAGTGTTTCTCGACAGCAACGTGGTGCTCTACCTGCTGTCGGAGGATGCGGTGAAGGCGGA
CGGCGCGGAGGCATTGCTGCAGCGCAGGCCCGTCATCAGTGTGCAGGTGCTCAATGAAGTGACCCACGTCTGCGTTCGCA
AGCTCAAGATGGGCTGGGACGAAGTCGGGCAGTTCCTTGCGTTGGTGCGATCGTTCTGCAAGATAGTGCCTCTGACGGTC
GATGTTCACGACCGTGCGCGCCAGCTGGCGGAGCGGCACCAATTGTCGTTCTACGACGCGTGCATCGTGGCGGCGGCCGC
CATCGAAGGGTGCCAGACCCTCTACTCCGAAGACATGCACCACGGCCTCATCATCGAAGAGAGCCTGTCGATTCGGAACC
CGTTCAACGTCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8663.97 Da        Isoelectric Point: 8.7848

>AT48025 WP_015463213.1 NZ_CP008995:c2561781-2561548 [Xanthomonas citri pv. citri]
MQVAKWGNSLAVRLPSSLVEALELREGDDIEIVVDDPRLFAVRKKPGPEAMLERLRAFRGKLPADFKFNRDEANGRG

Download         Length: 234 bp

>AT48025 NZ_CP008995:c2561781-2561548 [Xanthomonas citri pv. citri]
ATGCAAGTCGCGAAGTGGGGTAACAGCCTGGCGGTGCGCCTGCCGTCCAGTCTGGTGGAAGCGCTGGAACTGCGCGAGGG
CGACGACATCGAGATCGTCGTCGATGATCCGCGATTGTTCGCGGTGCGCAAGAAGCCGGGTCCGGAGGCCATGTTGGAGC
GGCTGCGTGCCTTCCGGGGCAAGTTGCCCGCAGATTTCAAGTTCAACCGGGACGAGGCCAATGGCCGCGGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4TWF0

References