Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 5048231..5048898 Replicon chromosome
Accession NZ_CP008992
Organism Xanthomonas citri subsp. citri UI6

Toxin (Protein)


Gene name vapC Uniprot ID M4U0C6
Locus tag AMD19_RS22070 Protein ID WP_005916679.1
Coordinates 5048482..5048898 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4U000
Locus tag AMD19_RS22065 Protein ID WP_005916676.1
Coordinates 5048231..5048485 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AMD19_RS22040 5044353..5044572 + 220 Protein_4204 RNA 2'-phosphotransferase -
AMD19_RS22045 5044729..5045994 + 1266 WP_015463799.1 cardiolipin synthase B -
AMD19_RS22050 5046020..5046547 - 528 WP_005916668.1 hypothetical protein -
AMD19_RS22055 5046786..5046992 + 207 WP_003489327.1 hypothetical protein -
AMD19_RS22060 5046979..5048085 + 1107 WP_005916674.1 type II toxin-antitoxin system RelE/ParE family toxin -
AMD19_RS22065 5048231..5048485 + 255 WP_005916676.1 Arc family DNA-binding protein Antitoxin
AMD19_RS22070 5048482..5048898 + 417 WP_005916679.1 type II toxin-antitoxin system VapC family toxin Toxin
AMD19_RS25090 5049020..5049292 - 273 WP_129545227.1 hypothetical protein -
AMD19_RS25095 5049351..5049563 - 213 WP_015472901.1 hypothetical protein -
AMD19_RS22075 5049820..5051439 + 1620 WP_015463800.1 hypothetical protein -
AMD19_RS22080 5051543..5051941 - 399 WP_004429277.1 DUF2384 domain-containing protein -
AMD19_RS22085 5052257..5052688 + 432 WP_005922907.1 hypothetical protein -
AMD19_RS24405 5052717..5053043 - 327 Protein_4216 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-39)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14795.09 Da        Isoelectric Point: 5.6920

>T48020 WP_005916679.1 NZ_CP008992:5048482-5048898 [Xanthomonas citri subsp. citri UI6]
VILLDTNVISELWRPQPNPQVVAWIDAQAVETLFLSVVTVAELRFGIAVMPKGRKRSTLHARLEGEVLPLFDGRLLAFDL
DASHAFAALASKARTAGLTLGRADAYIAATAAAQGLTVATRDTAPFEAMALDVINPWS

Download         Length: 417 bp

>T48020 NZ_CP008992:5048482-5048898 [Xanthomonas citri subsp. citri UI6]
GTGATCCTGCTCGATACCAATGTCATCTCCGAACTTTGGCGGCCTCAGCCTAATCCGCAGGTCGTCGCCTGGATCGATGC
ACAAGCTGTCGAGACACTGTTCCTGTCGGTCGTGACGGTGGCTGAACTCCGTTTCGGTATTGCCGTGATGCCCAAGGGCC
GAAAGCGATCCACCTTGCATGCTCGGTTGGAGGGCGAGGTATTGCCACTGTTCGACGGGCGCCTGCTCGCATTCGATCTG
GATGCATCACACGCATTTGCGGCGCTTGCATCGAAAGCCAGAACCGCAGGACTCACACTCGGGCGCGCCGATGCCTACAT
CGCTGCAACAGCAGCCGCGCAAGGATTGACCGTTGCCACTCGCGACACGGCACCATTCGAGGCGATGGCGTTAGACGTCA
TTAACCCTTGGAGTTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 8996.53 Da        Isoelectric Point: 11.3362

>AT48020 WP_005916676.1 NZ_CP008992:5048231-5048485 [Xanthomonas citri subsp. citri UI6]
MPSFTVRNIPDDVHRAIRARAALHGRSTEAEIRAILELAAKPADRVKLGSLLVSIGRDAGLTAKEANAFDKLRGKAAIKP
IGLK

Download         Length: 255 bp

>AT48020 NZ_CP008992:5048231-5048485 [Xanthomonas citri subsp. citri UI6]
ATGCCTTCTTTCACCGTCCGCAATATCCCAGACGACGTGCATCGCGCGATCCGCGCGCGGGCTGCACTTCATGGCCGCAG
CACCGAAGCGGAGATCCGCGCAATCCTTGAATTGGCGGCCAAACCCGCAGACCGGGTCAAACTCGGCTCACTGCTGGTGA
GCATCGGCCGCGACGCCGGCCTGACCGCAAAAGAGGCCAATGCCTTCGACAAGCTGCGCGGCAAGGCGGCGATCAAGCCG
ATCGGTCTGAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB M4U0C6

Antitoxin

Source ID Structure
AlphaFold DB A0A828YKJ0

References