Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 99461..100005 Replicon chromosome
Accession NZ_CP008989
Organism Xanthomonas citri pv. citri strain UI7

Toxin (Protein)


Gene name relE Uniprot ID H8FI26
Locus tag AMD18_RS00900 Protein ID WP_003487886.1
Coordinates 99706..100005 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID H8FI25
Locus tag AMD18_RS00895 Protein ID WP_003487884.1
Coordinates 99461..99718 (+) Length 86 a.a.

Genomic Context

AMD18_RS00890AMD18_RS00895AMD18_RS00900AMD18_RS00915AMD18_RS00880AMD18_RS00885AMD18_RS00905AMD18_RS00910AMD18_RS00920
Location: 98731..99393 (663 bp)
Type: Others
Protein ID: WP_005912558.1
Location: 99461..99718 (258 bp)
Type: Antitoxin
Protein ID: WP_003487884.1
Location: 99706..100005 (300 bp)
Type: Toxin
Protein ID: WP_003487886.1
Location: 102007..102918 (912 bp)
Type: Others
Protein ID: WP_011050074.1
Location: 94574..96061 (1488 bp)
Type: Others
Protein ID: WP_011050071.1
Location: 96058..98553 (2496 bp)
Type: Others
Protein ID: WP_015462699.1
Location: 100185..101084 (900 bp)
Type: Others
Protein ID: WP_011050073.1
Location: 101144..101881 (738 bp)
Type: Others
Protein ID: WP_003487890.1
Location: 103084..104157 (1074 bp)
Type: Others
Protein ID: WP_040107715.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD18_RS0088094574..96061-1488WP_011050071.1ribonuclease H-like domain-containing protein-
AMD18_RS0088596058..98553-2496WP_015462699.1DEAD/DEAH box helicase-
AMD18_RS0089098731..99393+663WP_005912558.1hemolysin III family protein-
AMD18_RS0089599461..99718+258WP_003487884.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
AMD18_RS0090099706..100005+300WP_003487886.1type II toxin-antitoxin system RelE/ParE family toxinToxin
AMD18_RS00905100185..101084-900WP_011050073.1SDR family NAD(P)-dependent oxidoreductase-
AMD18_RS00910101144..101881-738WP_003487890.1SDR family oxidoreductase-
AMD18_RS00915102007..102918+912WP_011050074.1LysR family transcriptional regulator-
AMD18_RS00920103084..104157-1074WP_040107715.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11231.97 Da        Isoelectric Point: 9.7235

>T48008 WP_003487886.1 NZ_CP008989:99706-100005 [Xanthomonas citri pv. citri]
MAEIIWSVPALADLDAIADYIAIDNAPAAAALVKRVFGHVEQLIEHPDSGSRPQELKRSRYRQIVEPPCRVFYRVDGQRI
VVVHVMRSERALRGNRLSR

Download         Length: 300 bp

>T48008 NZ_CP008989:99706-100005 [Xanthomonas citri pv. citri]
ATGGCTGAAATAATCTGGTCGGTGCCGGCATTGGCTGATCTGGACGCAATTGCCGACTACATCGCAATCGATAACGCACC
CGCTGCAGCGGCGCTGGTGAAACGGGTGTTCGGGCACGTTGAGCAATTGATCGAACACCCGGACAGCGGAAGCCGACCAC
AGGAACTCAAGCGCTCGCGCTATCGCCAGATTGTCGAACCACCTTGCCGCGTGTTCTACCGCGTGGATGGGCAGCGCATC
GTGGTGGTGCACGTCATGCGGTCGGAGCGCGCGCTTCGCGGGAACCGTCTTTCACGCTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9683.21 Da        Isoelectric Point: 9.8274

>AT48008 WP_003487884.1 NZ_CP008989:99461-99718 [Xanthomonas citri pv. citri]
MRTELVTTLKRQATELLAAAERDKEPILITQHGLPSAYLVDVASYERMQQRIALLEGIARGEMAVAEGRTLSHEQARHRM
ARWLK

Download         Length: 258 bp

>AT48008 NZ_CP008989:99461-99718 [Xanthomonas citri pv. citri]
ATGCGCACCGAACTTGTCACCACGCTCAAGCGTCAGGCGACCGAACTCCTTGCAGCTGCAGAGCGCGACAAGGAGCCAAT
CCTGATCACACAGCACGGTTTACCCAGTGCCTATCTGGTGGATGTTGCCAGCTATGAGCGCATGCAGCAGCGCATTGCGC
TCCTCGAAGGAATCGCCCGTGGAGAAATGGCAGTCGCGGAAGGCCGTACGCTGAGCCATGAACAGGCACGGCACCGCATG
GCGCGATGGCTGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBH8FI26

Antitoxin

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Source
ID
Structure
AlphaFold DBH8FI25

References