Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2619359..2619630 | Replicon | chromosome |
| Accession | NZ_CP008957 | ||
| Organism | Escherichia coli O157:H7 str. EDL933 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2619397..2619500 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2619359..2619630 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EDL933_RS13725 | 2616516..2617955 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EDL933_RS13730 | 2618073..2618309 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EDL933_RS13735 | 2618414..2618605 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EDL933_RS13740 | 2618606..2619262 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2619359..2619630 | + | 272 | - | - | Antitoxin |
| - | 2619397..2619500 | - | 104 | - | - | Toxin |
| EDL933_RS13750 | 2619658..2619999 | - | 342 | WP_000976483.1 | YebY family protein | - |
| EDL933_RS13755 | 2620012..2620884 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| EDL933_RS13760 | 2620888..2621262 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| EDL933_RS13765 | 2621401..2621631 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EDL933_RS13770 | 2621733..2622389 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| EDL933_RS13775 | 2622413..2623075 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47983 NZ_CP008957:c2619500-2619397 [Escherichia coli O157:H7 str. EDL933]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT47983 NZ_CP008957:2619359-2619630 [Escherichia coli O157:H7 str. EDL933]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
