Detailed information of TA system TA047981

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hicAB/UPF0150(antitoxin)
• Location: 2070098..2070736
• Replicon: chromosome
• Accession: NZ_CP008957
• Organism: Escherichia coli O157:H7 str. EDL933

Toxin (Protein)

• Gene name: hicA
• Uniprot ID: S1F9G9
• Locus tag: EDL933_RS10815
• Protein ID: WP_000813794.1
• Coordinates: 2070560..2070736 (-)
• Length: 59 a.a.

Antitoxin (Protein)

• Gene name: hicB
• Uniprot ID: -
• Locus tag: EDL933_RS10810
• Protein ID: WP_001270286.1
• Coordinates: 2070098..2070514 (-)
• Length: 139 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
EDL933_RS10790	2065250..2066191	-	942	WP_001251320.1	ABC transporter permease	-
EDL933_RS10795	2066192..2067205	-	1014	WP_000220402.1	ABC transporter ATP-binding protein	-
EDL933_RS10800	2067223..2068368	-	1146	WP_000047432.1	ABC transporter substrate-binding protein	-
EDL933_RS10805	2068613..2070019	-	1407	WP_000760654.1	PLP-dependent aminotransferase family protein	-
EDL933_RS10810	2070098..2070514	-	417	WP_001270286.1	type II toxin-antitoxin system antitoxin HicB	Antitoxin
EDL933_RS10815	2070560..2070736	-	177	WP_000813794.1	type II toxin-antitoxin system mRNA interferase toxin HicA	Toxin
EDL933_RS10820	2070958..2071188	+	231	WP_000494244.1	YncJ family protein	-
EDL933_RS10825	2071280..2073241	-	1962	WP_001303492.1	23S rRNA 5-hydroxycytidine C2501 synthase	-
EDL933_RS10830	2073314..2073850	-	537	WP_000429145.1	DNA-binding transcriptional regulator SutR	-
EDL933_RS10835	2073903..2075114	+	1212	WP_071525382.1	BenE family transporter YdcO	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HicA mRNA interferase family (5-57)

Antitoxin

• Cro/C1-type helix-turn-helix domain (91-134)

Sequences

Toxin

Protein

• Length: 59 a.a.
• Molecular weight: 6749.83 Da
• Isoelectric Point: 11.2298

>T47981 WP_000813794.1 NZ_CP008957:c2070736-2070560 [Escherichia coli O157:H7 str. EDL933]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Nucleotide

• Length: 177 bp

>T47981 NZ_CP008957:c2070736-2070560 [Escherichia coli O157:H7 str. EDL933]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin

Protein

• Length: 139 a.a.
• Molecular weight: 15246.63 Da
• Isoelectric Point: 4.7386

>AT47981 WP_001270286.1 NZ_CP008957:c2070514-2070098 [Escherichia coli O157:H7 str. EDL933]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Nucleotide

• Length: 417 bp

>AT47981 NZ_CP008957:c2070514-2070098 [Escherichia coli O157:H7 str. EDL933]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAAGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCAGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Structures

Toxin

• PDB: 6HPB