Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5068495..5068640 | Replicon | chromosome |
| Accession | NZ_CP008929 | ||
| Organism | Klebsiella pneumoniae strain PMK1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5068502..5068604 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5068495..5068640 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMK1_RS24780 | 5064026..5065459 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PMK1_RS24785 | 5065575..5065814 | + | 240 | WP_002911393.1 | YebV family protein | - |
| PMK1_RS24790 | 5065912..5066103 | + | 192 | WP_002911395.1 | YebW family protein | - |
| PMK1_RS24795 | 5066100..5066753 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| PMK1_RS24800 | 5066910..5067878 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PMK1_RS32230 | 5067983..5068126 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5068495..5068640 | + | 146 | - | - | Antitoxin |
| - | 5068502..5068604 | - | 103 | - | - | Toxin |
| PMK1_RS24810 | 5068763..5069101 | - | 339 | WP_002911404.1 | YebY family protein | - |
| PMK1_RS24815 | 5069118..5069987 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| PMK1_RS24820 | 5069991..5070365 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PMK1_RS24825 | 5070478..5070708 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PMK1_RS24830 | 5070787..5071446 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| PMK1_RS24835 | 5071450..5073510 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T47936 NZ_CP008929:c5068604-5068502 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT47936 NZ_CP008929:5068495-5068640 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
