Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2731835..2732036 | Replicon | chromosome |
| Accession | NZ_CP008897 | ||
| Organism | Enterobacter hormaechei subsp. hoffmannii ECNIH3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2731840..2731943 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2731835..2732036 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECNIH3_RS12850 | 2728097..2729545 | + | 1449 | WP_202195747.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECNIH3_RS12855 | 2729650..2729889 | + | 240 | WP_006811010.1 | YebV family protein | - |
| ECNIH3_RS12860 | 2729924..2730568 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| ECNIH3_RS12865 | 2730736..2731716 | + | 981 | WP_038416259.1 | VirK/YbjX family protein | - |
| ECNIH3_RS24800 | 2731762..2731959 | + | 198 | WP_071881497.1 | hypothetical protein | - |
| - | 2731835..2732036 | + | 202 | - | - | Antitoxin |
| - | 2731840..2731943 | - | 104 | - | - | Toxin |
| ECNIH3_RS12870 | 2732085..2732423 | - | 339 | WP_022648464.1 | YebY family protein | - |
| ECNIH3_RS12875 | 2732440..2733309 | - | 870 | WP_038416260.1 | copper homeostasis membrane protein CopD | - |
| ECNIH3_RS12880 | 2733311..2733682 | - | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| ECNIH3_RS12885 | 2733820..2734050 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ECNIH3_RS12890 | 2734162..2734800 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| ECNIH3_RS12895 | 2734825..2735487 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47873 NZ_CP008897:c2731943-2731840 [Enterobacter hormaechei subsp. hoffmannii ECNIH3]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT47873 NZ_CP008897:2731835-2732036 [Enterobacter hormaechei subsp. hoffmannii ECNIH3]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
