Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3254300..3254466 | Replicon | chromosome |
| Accession | NZ_CP008886 | ||
| Organism | Raoultella ornithinolytica strain A14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3254305..3254408 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3254300..3254466 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HY59_RS15065 | 3249895..3251328 | + | 1434 | WP_071934199.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HY59_RS15070 | 3251443..3251682 | + | 240 | WP_004863958.1 | YebV family protein | - |
| HY59_RS15075 | 3251776..3251967 | + | 192 | WP_015584014.1 | YebW family protein | - |
| HY59_RS15080 | 3251973..3252617 | - | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| HY59_RS15085 | 3252760..3253731 | + | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| HY59_RS15090 | 3253852..3253995 | + | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| - | 3254300..3254466 | + | 167 | - | - | Antitoxin |
| - | 3254305..3254408 | - | 104 | - | - | Toxin |
| HY59_RS15095 | 3254565..3254903 | - | 339 | WP_015584012.1 | YebY family protein | - |
| HY59_RS15100 | 3254920..3255789 | - | 870 | WP_032717102.1 | copper homeostasis membrane protein CopD | - |
| HY59_RS15105 | 3255793..3256167 | - | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| HY59_RS15110 | 3256294..3256524 | + | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| HY59_RS15115 | 3256603..3257262 | + | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| HY59_RS15120 | 3257268..3259328 | - | 2061 | WP_065906728.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47851 NZ_CP008886:c3254408-3254305 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT47851 NZ_CP008886:3254300-3254466 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
