Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 201379..201884 | Replicon | chromosome |
Accession | NZ_CP008870 | ||
Organism | Pseudomonas aeruginosa strain W36662 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A7M2ZNP4 |
Locus tag | HV97_RS00935 | Protein ID | WP_009875660.1 |
Coordinates | 201379..201660 (-) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A0H2ZJU8 |
Locus tag | HV97_RS00940 | Protein ID | WP_003137009.1 |
Coordinates | 201657..201884 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HV97_RS00910 | 196630..197979 | + | 1350 | WP_003142411.1 | C4-dicarboxylate transporter DctA | - |
HV97_RS00915 | 198028..198714 | + | 687 | WP_004351997.1 | FadR family transcriptional regulator | - |
HV97_RS00920 | 198815..199549 | + | 735 | WP_003117208.1 | GntR family transcriptional regulator | - |
HV97_RS00925 | 199753..200139 | + | 387 | WP_014602345.1 | aegerolysin family protein | - |
HV97_RS00930 | 200171..201079 | - | 909 | WP_003083769.1 | LysR family transcriptional regulator | - |
HV97_RS00935 | 201379..201660 | - | 282 | WP_009875660.1 | type II toxin-antitoxin system toxin ParE | Toxin |
HV97_RS00940 | 201657..201884 | - | 228 | WP_003137009.1 | CopG family ribbon-helix-helix protein | Antitoxin |
HV97_RS00945 | 202060..202680 | - | 621 | WP_023086863.1 | hypothetical protein | - |
HV97_RS00950 | 202781..203281 | + | 501 | WP_003101228.1 | LEA type 2 family protein | - |
HV97_RS00955 | 203354..203695 | + | 342 | WP_003101229.1 | alkylphosphonate utilization protein | - |
HV97_RS00960 | 203777..205204 | - | 1428 | WP_003083784.1 | GABA permease | - |
HV97_RS00965 | 205373..206866 | - | 1494 | WP_003101230.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10461.25 Da Isoelectric Point: 10.4670
>T47812 WP_009875660.1 NZ_CP008870:c201660-201379 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLKRWPFSAPFRVKGKE
IQILRIDRVEITP
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLKRWPFSAPFRVKGKE
IQILRIDRVEITP
Download Length: 282 bp
>T47812 NZ_CP008870:c201660-201379 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGTAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGAAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGAGTCGAAATTACCCCCTGA
ATGAGCCTGAAGTGGACCCGTAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGAAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGAGTCGAAATTACCCCCTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8526.56 Da Isoelectric Point: 5.5740
>AT47812 WP_003137009.1 NZ_CP008870:c201884-201657 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHAEIEKRWGLQ
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHAEIEKRWGLQ
Download Length: 228 bp
>AT47812 NZ_CP008870:c201884-201657 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAGCACGCGGAGATCGAGAAGCGCTGGGGGCTGCAATGA
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAGCACGCGGAGATCGAGAAGCGCTGGGGGCTGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7M2ZNP4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H2ZJU8 |