47801

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 1795342..1795847 Replicon chromosome
Accession NZ_CP008868
Organism Pseudomonas aeruginosa strain T63266

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag HV99_RS08200 Protein ID WP_003083773.1
Coordinates 1795342..1795623 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A1C7BDS9
Locus tag HV99_RS08205 Protein ID WP_003083775.1
Coordinates 1795620..1795847 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV99_RS08175 1790593..1791942 + 1350 WP_003142411.1 C4-dicarboxylate transporter DctA -
HV99_RS08180 1791991..1792677 + 687 WP_003083762.1 FadR family transcriptional regulator -
HV99_RS08185 1792778..1793512 + 735 WP_003117208.1 GntR family transcriptional regulator -
HV99_RS08190 1793716..1794102 + 387 WP_014602345.1 aegerolysin family protein -
HV99_RS08195 1794134..1795042 - 909 WP_016561475.1 LysR family transcriptional regulator -
HV99_RS08200 1795342..1795623 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
HV99_RS08205 1795620..1795847 - 228 WP_003083775.1 CopG family ribbon-helix-helix protein Antitoxin
HV99_RS08210 1796023..1796643 - 621 WP_003101226.1 hypothetical protein -
HV99_RS08215 1796744..1797244 + 501 WP_003112629.1 LEA type 2 family protein -
HV99_RS08220 1797317..1797658 + 342 WP_003101229.1 alkylphosphonate utilization protein -
HV99_RS08225 1797740..1799167 - 1428 WP_003083784.1 GABA permease -
HV99_RS08230 1799336..1800829 - 1494 WP_003101230.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T47801 WP_003083773.1 NZ_CP008868:c1795623-1795342 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

>T47801 NZ_CP008868:c1795623-1795342 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8556.58 Da        Isoelectric Point: 5.5740

>AT47801 WP_003083775.1 NZ_CP008868:c1795847-1795620 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Download         Length: 228 bp

>AT47801 NZ_CP008868:c1795847-1795620 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7BDS9

References