Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4719970..4720138 | Replicon | chromosome |
| Accession | NZ_CP008841 | ||
| Organism | Klebsiella michiganensis strain M1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4719977..4720080 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4719970..4720138 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HR38_RS21615 | 4715244..4715762 | + | 519 | WP_038424970.1 | spore coat U domain-containing protein | - |
| HR38_RS21620 | 4715781..4716545 | + | 765 | WP_038424670.1 | molecular chaperone | - |
| HR38_RS21625 | 4716548..4718878 | + | 2331 | WP_038424671.1 | fimbrial biogenesis outer membrane usher protein | - |
| HR38_RS21630 | 4718893..4719852 | + | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| - | 4719970..4720138 | + | 169 | - | - | Antitoxin |
| - | 4719977..4720080 | - | 104 | - | - | Toxin |
| HR38_RS21635 | 4720237..4720575 | - | 339 | WP_004103344.1 | YebY family protein | - |
| HR38_RS21640 | 4720592..4721461 | - | 870 | WP_038424672.1 | copper homeostasis membrane protein CopD | - |
| HR38_RS21645 | 4721466..4721840 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| HR38_RS21650 | 4721976..4722206 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HR38_RS21655 | 4722285..4722944 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| HR38_RS21660 | 4722951..4725011 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47694 NZ_CP008841:c4720080-4719977 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT47694 NZ_CP008841:4719970-4720138 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
