Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2809981..2810190 | Replicon | chromosome |
| Accession | NZ_CP008823 | ||
| Organism | UNVERIFIED_ORG: Enterobacter cloacae ECNIH2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2809994..2810097 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2809981..2810190 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECNIH2_RS13325 (ECNIH2_13355) | 2806249..2807697 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECNIH2_RS13330 (ECNIH2_13360) | 2807804..2808043 | + | 240 | WP_003859885.1 | YebV family protein | - |
| ECNIH2_RS13335 (ECNIH2_13365) | 2808078..2808722 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| ECNIH2_RS13340 (ECNIH2_13370) | 2808890..2809870 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| ECNIH2_RS13345 (ECNIH2_13375) | 2809916..2810113 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2809981..2810190 | + | 210 | - | - | Antitoxin |
| - | 2809994..2810097 | - | 104 | - | - | Toxin |
| ECNIH2_RS13350 (ECNIH2_13380) | 2810239..2810577 | - | 339 | WP_003859787.1 | YebY family protein | - |
| ECNIH2_RS13355 (ECNIH2_13385) | 2810594..2811463 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| ECNIH2_RS13360 (ECNIH2_13390) | 2811465..2811836 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| ECNIH2_RS13365 (ECNIH2_13395) | 2811974..2812204 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ECNIH2_RS13370 (ECNIH2_13400) | 2812316..2812966 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| ECNIH2_RS13375 (ECNIH2_13405) | 2812991..2813653 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47628 NZ_CP008823:c2810097-2809994 [Enterobacter cloacae ECNIH2]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT47628 NZ_CP008823:2809981-2810190 [Enterobacter cloacae ECNIH2]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
