Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898348..1898619 | Replicon | chromosome |
| Accession | NZ_CP008801 | ||
| Organism | Escherichia coli KLY | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1898386..1898489 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898348..1898619 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ24_RS09465 | 1895505..1896944 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HQ24_RS09470 | 1897062..1897298 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HQ24_RS09475 | 1897403..1897594 | + | 192 | WP_000457842.1 | YebW family protein | - |
| HQ24_RS09480 | 1897595..1898251 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1898348..1898619 | + | 272 | - | - | Antitoxin |
| - | 1898386..1898489 | - | 104 | - | - | Toxin |
| HQ24_RS09490 | 1898647..1898988 | - | 342 | WP_000976476.1 | YebY family protein | - |
| HQ24_RS09495 | 1899001..1899873 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HQ24_RS09500 | 1899877..1900251 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HQ24_RS09505 | 1900390..1900620 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HQ24_RS09510 | 1900722..1901378 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HQ24_RS09515 | 1901402..1902064 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47504 NZ_CP008801:c1898489-1898386 [Escherichia coli KLY]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT47504 NZ_CP008801:1898348-1898619 [Escherichia coli KLY]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
