Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2445086..2445231 | Replicon | chromosome |
| Accession | NZ_CP008797 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae KPNIH24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2445122..2445224 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2445086..2445231 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPNIH24_RS12130 | 2440216..2442276 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| KPNIH24_RS12135 | 2442280..2442939 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KPNIH24_RS12140 | 2443018..2443248 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KPNIH24_RS12145 | 2443361..2443735 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KPNIH24_RS12150 | 2443739..2444608 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KPNIH24_RS12155 | 2444625..2444963 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2445086..2445231 | - | 146 | - | - | Antitoxin |
| - | 2445122..2445224 | + | 103 | - | - | Toxin |
| KPNIH24_RS31365 | 2445599..2445742 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KPNIH24_RS12165 | 2445847..2446815 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KPNIH24_RS12170 | 2446972..2447625 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KPNIH24_RS12175 | 2447622..2447813 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KPNIH24_RS12180 | 2447911..2448150 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KPNIH24_RS12185 | 2448266..2449699 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T47473 NZ_CP008797:2445122-2445224 [Klebsiella pneumoniae subsp. pneumoniae KPNIH24]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT47473 NZ_CP008797:c2445231-2445086 [Klebsiella pneumoniae subsp. pneumoniae KPNIH24]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
