Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3801631..3801799 | Replicon | chromosome |
| Accession | NZ_CP008788 | ||
| Organism | Klebsiella oxytoca KONIH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3801638..3801741 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3801631..3801799 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KONIH1_RS17625 | 3796905..3797423 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| KONIH1_RS17630 | 3797442..3798206 | + | 765 | WP_042945473.1 | molecular chaperone | - |
| KONIH1_RS17635 | 3798209..3800539 | + | 2331 | WP_042945474.1 | fimbrial biogenesis outer membrane usher protein | - |
| KONIH1_RS17640 | 3800554..3801513 | + | 960 | WP_042945476.1 | spore coat U domain-containing protein | - |
| - | 3801631..3801799 | + | 169 | - | - | Antitoxin |
| - | 3801638..3801741 | - | 104 | - | - | Toxin |
| KONIH1_RS17645 | 3801898..3802236 | - | 339 | WP_004103344.1 | YebY family protein | - |
| KONIH1_RS17650 | 3802253..3803122 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| KONIH1_RS17655 | 3803127..3803501 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| KONIH1_RS17660 | 3803637..3803867 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| KONIH1_RS17665 | 3803946..3804605 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| KONIH1_RS17670 | 3804612..3806672 | - | 2061 | WP_042945478.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T47448 NZ_CP008788:c3801741-3801638 [Klebsiella oxytoca KONIH1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT47448 NZ_CP008788:3801631-3801799 [Klebsiella oxytoca KONIH1]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
