Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 70124..70658 | Replicon | chromosome |
Accession | NZ_CP008729 | ||
Organism | Burkholderia multivorans strain DDS 15A-1 |
Toxin (Protein)
Gene name | parE | Uniprot ID | J4RBB5 |
Locus tag | DM80_RS05300 | Protein ID | WP_006413674.1 |
Coordinates | 70124..70423 (-) | Length | 100 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | J4RB90 |
Locus tag | DM80_RS05305 | Protein ID | WP_006413656.1 |
Coordinates | 70413..70658 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
DM80_RS05285 | 66474..67781 | + | 1308 | WP_012216990.1 | shikimate transporter | - |
DM80_RS05290 | 67815..68543 | - | 729 | WP_048803632.1 | HNH endonuclease | - |
DM80_RS05295 | 68714..70015 | + | 1302 | WP_006413706.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
DM80_RS05300 | 70124..70423 | - | 300 | WP_006413674.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
DM80_RS05305 | 70413..70658 | - | 246 | WP_006413656.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
DM80_RS05310 | 70797..71567 | + | 771 | WP_006403543.1 | helix-turn-helix domain-containing protein | - |
DM80_RS05315 | 71612..73912 | - | 2301 | WP_048804736.1 | ATP-dependent DNA helicase | - |
DM80_RS05320 | 73909..75612 | - | 1704 | WP_048803633.1 | VRR-NUC domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11542.08 Da Isoelectric Point: 8.4461
>T47305 WP_006413674.1 NZ_CP008729:c70423-70124 [Burkholderia multivorans]
MPVKARTVRLTPLAEADLEAIWAYTYERWSLGQAERYIGELSTAFERLARRESVGWPSRAGGNYSRYLVGSHVVFYRETT
ETLDVIRVLHQRMDVDRHL
MPVKARTVRLTPLAEADLEAIWAYTYERWSLGQAERYIGELSTAFERLARRESVGWPSRAGGNYSRYLVGSHVVFYRETT
ETLDVIRVLHQRMDVDRHL
Download Length: 300 bp
>T47305 NZ_CP008729:c70423-70124 [Burkholderia multivorans]
ATGCCGGTTAAGGCGCGCACGGTACGCCTGACGCCACTGGCGGAGGCCGATCTCGAGGCCATCTGGGCTTACACGTACGA
GCGCTGGTCACTCGGCCAGGCTGAGCGCTATATCGGCGAGCTGAGCACGGCGTTCGAGCGGCTGGCGCGCCGGGAGTCGG
TAGGGTGGCCGAGTCGCGCGGGCGGCAACTATTCGCGCTACCTGGTCGGTTCGCACGTGGTGTTCTATCGGGAAACGACC
GAAACCCTTGACGTCATTCGCGTGCTGCACCAGCGGATGGATGTCGACCGACATCTGTAA
ATGCCGGTTAAGGCGCGCACGGTACGCCTGACGCCACTGGCGGAGGCCGATCTCGAGGCCATCTGGGCTTACACGTACGA
GCGCTGGTCACTCGGCCAGGCTGAGCGCTATATCGGCGAGCTGAGCACGGCGTTCGAGCGGCTGGCGCGCCGGGAGTCGG
TAGGGTGGCCGAGTCGCGCGGGCGGCAACTATTCGCGCTACCTGGTCGGTTCGCACGTGGTGTTCTATCGGGAAACGACC
GAAACCCTTGACGTCATTCGCGTGCTGCACCAGCGGATGGATGTCGACCGACATCTGTAA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8632.71 Da Isoelectric Point: 6.4604
>AT47305 WP_006413656.1 NZ_CP008729:c70658-70413 [Burkholderia multivorans]
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G
Download Length: 246 bp
>AT47305 NZ_CP008729:c70658-70413 [Burkholderia multivorans]
ATGGCACGAAATACATCGATCTCGCTGGGCGATCATCTGGCCGAATTTGTCGACATGCAGGTCGCGTCCGGCCGCTACGG
CTCGGCTAGCGATGTCGTGCGCGCGGGCCTGCGCCTGCTCGAGACACAGGAAACCGAGCTGCGGGCGCTGCAGGAAGCGT
TGAAGGCGGGCGAGGCATCGGGCACACCGGCCCCGTTCGACAGCCAGGCGTTCCTGGCCCGGATGCGGGCCAAGCATGCC
GGTTAA
ATGGCACGAAATACATCGATCTCGCTGGGCGATCATCTGGCCGAATTTGTCGACATGCAGGTCGCGTCCGGCCGCTACGG
CTCGGCTAGCGATGTCGTGCGCGCGGGCCTGCGCCTGCTCGAGACACAGGAAACCGAGCTGCGGGCGCTGCAGGAAGCGT
TGAAGGCGGGCGAGGCATCGGGCACACCGGCCCCGTTCGACAGCCAGGCGTTCCTGGCCCGGATGCGGGCCAAGCATGCC
GGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3KLL7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3KUX0 |