Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2749953..2750224 Replicon chromosome
Accession NZ_CP008697
Organism Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2749991..2750094 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2749953..2750224 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FH07_RS13690 2747110..2748549 + 1440 WP_024181822.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
FH07_RS13695 2748667..2748903 + 237 WP_001295499.1 DUF1480 family protein -
FH07_RS13700 2749008..2749199 + 192 WP_001296140.1 YebW family protein -
FH07_RS13705 2749200..2749856 - 657 WP_022645801.1 protein-serine/threonine phosphatase -
- 2749953..2750224 + 272 - - Antitoxin
- 2749991..2750094 - 104 - - Toxin
FH07_RS13715 2750252..2750593 - 342 WP_000976472.1 YebY family protein -
FH07_RS13720 2750606..2751478 - 873 WP_060684433.1 copper homeostasis membrane protein CopD -
FH07_RS13725 2751482..2751856 - 375 WP_022645803.1 CopC domain-containing protein YobA -
FH07_RS13730 2751995..2752225 + 231 WP_000916763.1 DNA polymerase III subunit theta -
FH07_RS13735 2752327..2752983 + 657 WP_000011651.1 carbon-nitrogen hydrolase family protein -
FH07_RS13740 2753007..2753669 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T47237 NZ_CP008697:c2750094-2749991 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT47237 NZ_CP008697:2749953-2750224 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References