Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) EcnAB/-
Location 3936019..3936380 Replicon chromosome
Accession NZ_CP007810
Organism Xanthomonas oryzae pv. oryzicola strain YM15

Toxin (Protein)


Gene name EcnB Uniprot ID G7TLC7
Locus tag FE36_RS17300 Protein ID WP_011257368.1
Coordinates 3936019..3936153 (-) Length 45 a.a.

Antitoxin (Protein)


Gene name EcnA Uniprot ID G7TLC8
Locus tag FE36_RS17305 Protein ID WP_011407410.1
Coordinates 3936228..3936380 (-) Length 51 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FE36_RS17285 3933033..3934055 - 1023 WP_076342527.1 MBL fold metallo-hydrolase -
FE36_RS17290 3934108..3935397 - 1290 WP_047340246.1 tryptophan--tRNA ligase -
FE36_RS17295 3935566..3935775 - 210 WP_047340247.1 CsbD family protein -
FE36_RS17300 3936019..3936153 - 135 WP_011257368.1 entericidin A/B family lipoprotein Toxin
FE36_RS17305 3936228..3936380 - 153 WP_011407410.1 entericidin A/B family lipoprotein Antitoxin
FE36_RS17310 3936488..3937411 - 924 WP_014505030.1 arginase -
FE36_RS17315 3937733..3938341 + 609 WP_047340248.1 hypothetical protein -
FE36_RS17320 3938338..3938573 + 236 Protein_3464 GTPase -
FE36_RS17325 3938583..3938875 + 293 Protein_3465 hypothetical protein -
FE36_RS17330 3939355..3940038 + 684 WP_014505034.1 dTMP kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Entericidin A/B

(23-42)

Antitoxin

Entericidin A/B

(23-42)


Sequences

Toxin        


Download         Length: 45 a.a.        Molecular weight: 4457.33 Da        Isoelectric Point: 10.2040

>T47214 WP_011257368.1 NZ_CP007810:c3936153-3936019 [Xanthomonas oryzae pv. oryzicola]
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK

Download         Length: 135 bp

>T47214 NZ_CP007810:c3936153-3936019 [Xanthomonas oryzae pv. oryzicola]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Antitoxin


Download         Length: 51 a.a.        Molecular weight: 5046.99 Da        Isoelectric Point: 8.7942

>AT47214 WP_011407410.1 NZ_CP007810:c3936380-3936228 [Xanthomonas oryzae pv. oryzicola]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC

Download         Length: 153 bp

>AT47214 NZ_CP007810:c3936380-3936228 [Xanthomonas oryzae pv. oryzicola]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0C5UG40

Antitoxin

Source ID Structure
AlphaFold DB A0A0C5V759

References