Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 5238905..5239736 | Replicon | chromosome |
| Accession | NZ_CP007799 | ||
| Organism | Escherichia coli Nissle 1917 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1P968 |
| Locus tag | ECOLIN_RS26115 | Protein ID | WP_000854814.1 |
| Coordinates | 5238905..5239279 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | ECOLIN_RS26120 | Protein ID | WP_038427208.1 |
| Coordinates | 5239368..5239736 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOLIN_RS26080 (ECOLIN_25295) | 5233970..5234434 | - | 465 | WP_000347252.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | - |
| ECOLIN_RS26085 (ECOLIN_25300) | 5234434..5234769 | - | 336 | WP_001296435.1 | type II toxin-antitoxin system antitoxin PrlF | - |
| ECOLIN_RS26090 (ECOLIN_25305) | 5234918..5235769 | - | 852 | Protein_4938 | UxaA family hydrolase | - |
| ECOLIN_RS26095 (ECOLIN_25310) | 5235746..5236864 | + | 1119 | WP_128971752.1 | 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG | - |
| ECOLIN_RS31880 | 5237055..5237138 | + | 84 | Protein_4940 | type II toxin-antitoxin system HigB family toxin | - |
| ECOLIN_RS26100 (ECOLIN_25315) | 5237135..5237551 | + | 417 | WP_000560266.1 | type II toxin-antitoxin system antitoxin HigA | - |
| ECOLIN_RS26105 (ECOLIN_25320) | 5237596..5238330 | - | 735 | Protein_4942 | NADPH-dependent 2,4-dienoyl-CoA reductase | - |
| ECOLIN_RS32225 | 5238576..5238689 | - | 114 | WP_001161660.1 | DUF957 domain-containing protein | - |
| ECOLIN_RS26110 (ECOLIN_25325) | 5238702..5238908 | - | 207 | WP_128971753.1 | hypothetical protein | - |
| ECOLIN_RS26115 (ECOLIN_25330) | 5238905..5239279 | - | 375 | WP_000854814.1 | type IV toxin-antitoxin system toxin CbtA | Toxin |
| ECOLIN_RS26120 (ECOLIN_25335) | 5239368..5239736 | - | 369 | WP_038427208.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| ECOLIN_RS26125 (ECOLIN_25340) | 5239810..5240031 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| ECOLIN_RS26130 (ECOLIN_25345) | 5240100..5240576 | - | 477 | WP_001186170.1 | RadC family protein | - |
| ECOLIN_RS26135 (ECOLIN_25350) | 5240592..5241077 | - | 486 | WP_000213703.1 | antirestriction protein | - |
| ECOLIN_RS32440 | 5241168..5241320 | - | 153 | Protein_4950 | DUF945 domain-containing protein | - |
| ECOLIN_RS26140 (ECOLIN_25355) | 5241318..5242106 | + | 789 | Protein_4951 | galactose/glucose ABC transporter substrate-binding protein MglB | - |
| ECOLIN_RS26145 (ECOLIN_25360) | 5242167..5243687 | + | 1521 | WP_000255034.1 | galactose/methyl galactoside ABC transporter ATP-binding protein MglA | - |
| ECOLIN_RS26150 (ECOLIN_25365) | 5243703..5244713 | + | 1011 | WP_001275112.1 | galactose/methyl galactoside ABC transporter permease MglC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13898.94 Da Isoelectric Point: 7.8522
>T47055 WP_000854814.1 NZ_CP007799:c5239279-5238905 [Escherichia coli Nissle 1917]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T47055 NZ_CP007799:c5239279-5238905 [Escherichia coli Nissle 1917]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13507.41 Da Isoelectric Point: 6.4652
>AT47055 WP_038427208.1 NZ_CP007799:c5239736-5239368 [Escherichia coli Nissle 1917]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT47055 NZ_CP007799:c5239736-5239368 [Escherichia coli Nissle 1917]
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCCCCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCCCCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|