Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2339595..2340426 | Replicon | chromosome |
| Accession | NZ_CP007799 | ||
| Organism | Escherichia coli Nissle 1917 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1P968 |
| Locus tag | ECOLIN_RS11870 | Protein ID | WP_000854814.1 |
| Coordinates | 2340052..2340426 (+) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | ECOLIN_RS11865 | Protein ID | WP_071925532.1 |
| Coordinates | 2339595..2339963 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOLIN_RS11830 (ECOLIN_11415) | 2334812..2335882 | + | 1071 | WP_000102631.1 | patatin-like phospholipase family protein | - |
| ECOLIN_RS11835 (ECOLIN_11420) | 2336018..2336695 | + | 678 | WP_001362823.1 | hypothetical protein | - |
| ECOLIN_RS11840 (ECOLIN_11425) | 2336711..2337121 | + | 411 | WP_000846704.1 | hypothetical protein | - |
| ECOLIN_RS11845 (ECOLIN_11430) | 2337342..2338163 | + | 822 | WP_001234569.1 | DUF945 domain-containing protein | - |
| ECOLIN_RS11850 (ECOLIN_11435) | 2338254..2338739 | + | 486 | WP_000213703.1 | antirestriction protein | - |
| ECOLIN_RS11855 (ECOLIN_11440) | 2338755..2339231 | + | 477 | WP_001351157.1 | RadC family protein | - |
| ECOLIN_RS11860 (ECOLIN_11445) | 2339300..2339521 | + | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| ECOLIN_RS11865 (ECOLIN_11450) | 2339595..2339963 | + | 369 | WP_071925532.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| ECOLIN_RS11870 (ECOLIN_11455) | 2340052..2340426 | + | 375 | WP_000854814.1 | type IV toxin-antitoxin system toxin CbtA | Toxin |
| ECOLIN_RS11875 (ECOLIN_11460) | 2340423..2340617 | + | 195 | WP_000988601.1 | hypothetical protein | - |
| ECOLIN_RS32180 | 2340630..2340743 | + | 114 | WP_001161660.1 | DUF957 domain-containing protein | - |
| ECOLIN_RS28730 | 2341032..2341178 | - | 147 | Protein_2259 | transposase domain-containing protein | - |
| ECOLIN_RS11885 (ECOLIN_11465) | 2341232..2341414 | + | 183 | WP_001016348.1 | hypothetical protein | - |
| ECOLIN_RS11890 (ECOLIN_11470) | 2341515..2341844 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| ECOLIN_RS11895 (ECOLIN_11475) | 2342016..2343074 | - | 1059 | WP_001200890.1 | FUSC family protein | - |
| ECOLIN_RS11900 (ECOLIN_11480) | 2343272..2343745 | - | 474 | WP_001105376.1 | DNA gyrase inhibitor SbmC | - |
| ECOLIN_RS11905 (ECOLIN_11485) | 2343864..2345030 | - | 1167 | WP_001297905.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13898.94 Da Isoelectric Point: 7.8522
>T47041 WP_000854814.1 NZ_CP007799:2340052-2340426 [Escherichia coli Nissle 1917]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T47041 NZ_CP007799:2340052-2340426 [Escherichia coli Nissle 1917]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13621.44 Da Isoelectric Point: 4.7830
>AT47041 WP_071925532.1 NZ_CP007799:2339595-2339963 [Escherichia coli Nissle 1917]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
Download Length: 369 bp
>AT47041 NZ_CP007799:2339595-2339963 [Escherichia coli Nissle 1917]
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGTTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACCTGCGAAGCCGATACCCTGGGCTCCTG
TGATTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGTTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACCTGCGAAGCCGATACCCTGGGCTCCTG
TGATTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|