Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3345854..3345999 | Replicon | chromosome |
| Accession | NZ_CP007731 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae KPNIH27 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3345861..3345963 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3345854..3345999 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPNIH27_RS16705 | 3341386..3342819 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KPNIH27_RS16710 | 3342935..3343174 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KPNIH27_RS16715 | 3343272..3343463 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KPNIH27_RS16720 | 3343460..3344113 | - | 654 | WP_031589291.1 | protein-serine/threonine phosphatase | - |
| KPNIH27_RS16725 | 3344270..3345238 | + | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| KPNIH27_RS33935 | 3345343..3345486 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3345854..3345999 | + | 146 | - | - | Antitoxin |
| - | 3345861..3345963 | - | 103 | - | - | Toxin |
| KPNIH27_RS16735 | 3346122..3346460 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KPNIH27_RS16740 | 3346477..3347346 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KPNIH27_RS16745 | 3347350..3347724 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KPNIH27_RS16750 | 3347837..3348067 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KPNIH27_RS16755 | 3348146..3348805 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KPNIH27_RS16760 | 3348809..3350869 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T46949 NZ_CP007731:c3345963-3345861 [Klebsiella pneumoniae subsp. pneumoniae KPNIH27]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT46949 NZ_CP007731:3345854-3345999 [Klebsiella pneumoniae subsp. pneumoniae KPNIH27]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
