Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 213321..213865 Replicon chromosome
Accession NZ_CP007641
Organism Rhizobium etli bv. phaseoli str. IE4803

Toxin (Protein)


Gene name parE Uniprot ID A0A7U4ILB9
Locus tag IE4803_RS00995 Protein ID WP_039617277.1
Coordinates 213575..213865 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A060I1L4
Locus tag IE4803_RS00990 Protein ID WP_038686168.1
Coordinates 213321..213572 (+) Length 84 a.a.

Genomic Context

IE4803_RS00965IE4803_RS00970IE4803_RS00975IE4803_RS00990IE4803_RS00995IE4803_RS01005IE4803_RS01010IE4803_RS01015IE4803_RS01020IE4803_RS00980IE4803_RS00985IE4803_RS34655
Location: 209339..210298 (960 bp)
Type: Others
Protein ID: WP_039617273.1
Location: 210500..210880 (381 bp)
Type: Others
Protein ID: WP_009982537.1
Location: 211047..212351 (1305 bp)
Type: Others
Protein ID: WP_004673542.1
Location: 213321..213572 (252 bp)
Type: Antitoxin
Protein ID: WP_038686168.1
Location: 213575..213865 (291 bp)
Type: Toxin
Protein ID: WP_039617277.1
Location: 214215..214532 (318 bp)
Type: Others
Protein ID: WP_038686170.1
Location: 214842..215834 (993 bp)
Type: Others
Protein ID: WP_039617279.1
Location: 215923..217434 (1512 bp)
Type: Others
Protein ID: WP_039617281.1
Location: 217442..218545 (1104 bp)
Type: Others
Protein ID: WP_039617283.1
Location: 212348..212572 (225 bp)
Type: Others
Protein ID: WP_010057833.1
Location: 212899..213108 (210 bp)
Type: Others
Protein ID: WP_009994618.1
Location: 214493..214843 (351 bp)
Type: Others
Protein ID: WP_194252161.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
IE4803_RS00965209339..210298+960WP_039617273.1glyoxylate/hydroxypyruvate reductase A-
IE4803_RS00970210500..210880+381WP_009982537.1hypothetical protein-
IE4803_RS00975211047..212351+1305WP_004673542.1nicotinate phosphoribosyltransferase-
IE4803_RS00980212348..212572-225WP_010057833.1hypothetical protein-
IE4803_RS00985212899..213108-210WP_009994618.1KTSC domain-containing protein-
IE4803_RS00990213321..213572+252WP_038686168.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
IE4803_RS00995213575..213865+291WP_039617277.1type II toxin-antitoxin system RelE/ParE family toxinToxin
IE4803_RS01005214215..214532+318WP_038686170.1hypothetical protein-
IE4803_RS34655214493..214843-351WP_194252161.1hypothetical protein-
IE4803_RS01010214842..215834+993WP_039617279.1BMP family ABC transporter substrate-binding protein-
IE4803_RS01015215923..217434+1512WP_039617281.1ABC transporter ATP-binding protein-
IE4803_RS01020217442..218545+1104WP_039617283.1ABC transporter permease-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(3-70)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10913.40 Da        Isoelectric Point: 5.8267

>T46768 WP_039617277.1 NZ_CP007641:213575-213865 [Rhizobium etli bv. phaseoli str. IE4803]
MGFRLTEEAEEDIVGIAETGIRLFGSAHARRYHDELYAIFDMIAANPCMARERHEISPPMRIHPFKAHLVVYTIAEGDNV
LIVRIGHGHEDWSSQV

Download         Length: 291 bp

>T46768 NZ_CP007641:213575-213865 [Rhizobium etli bv. phaseoli str. IE4803]
ATGGGCTTTCGCCTTACGGAAGAAGCGGAAGAGGACATTGTCGGCATAGCCGAAACGGGCATTCGCCTGTTTGGCTCAGC
GCACGCTCGGCGCTACCATGATGAACTCTACGCCATTTTTGATATGATTGCTGCCAATCCCTGTATGGCGCGCGAACGGC
ATGAAATTTCTCCTCCGATGCGCATTCATCCGTTCAAGGCCCATCTCGTCGTTTATACGATTGCGGAGGGCGATAATGTT
CTCATTGTCCGTATTGGCCACGGACACGAAGATTGGTCCAGTCAGGTTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9352.44 Da        Isoelectric Point: 8.5309

>AT46768 WP_038686168.1 NZ_CP007641:213321-213572 [Rhizobium etli bv. phaseoli str. IE4803]
MATMNVSLPDPMKDWVEAQTKTGRYANASDYVRDLIRKDQERNDKVAAMQRFVDEGLKSGVGSRSKDELFEAARARVESS
RGN

Download         Length: 252 bp

>AT46768 NZ_CP007641:213321-213572 [Rhizobium etli bv. phaseoli str. IE4803]
ATGGCGACCATGAACGTATCGCTGCCCGATCCCATGAAAGATTGGGTGGAAGCGCAAACCAAAACAGGCCGTTATGCCAA
TGCGAGCGATTATGTCCGCGACCTCATCAGGAAAGATCAGGAGCGAAACGACAAGGTCGCAGCTATGCAGCGCTTTGTCG
ATGAAGGCTTGAAGAGCGGCGTCGGGTCGCGGTCGAAGGACGAGCTGTTTGAGGCGGCGCGGGCGCGCGTGGAAAGCTCT
CGCGGCAATTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A7U4ILB9

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A060I1L4

References