Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023185..2023456 | Replicon | chromosome |
| Accession | NZ_CP007594 | ||
| Organism | Escherichia coli strain SEC470 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023223..2023326 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023185..2023456 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DP32_RS10160 | 2020342..2021781 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DP32_RS10165 | 2021899..2022135 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| DP32_RS10170 | 2022240..2022431 | + | 192 | WP_001338167.1 | YebW family protein | - |
| DP32_RS10175 | 2022432..2023088 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2023185..2023456 | + | 272 | - | - | Antitoxin |
| - | 2023223..2023326 | - | 104 | - | - | Toxin |
| DP32_RS10185 | 2023484..2023825 | - | 342 | WP_000976472.1 | YebY family protein | - |
| DP32_RS10190 | 2023838..2024710 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| DP32_RS10195 | 2024714..2025088 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DP32_RS10200 | 2025227..2025457 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DP32_RS10205 | 2025559..2026215 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DP32_RS10210 | 2026239..2026901 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46693 NZ_CP007594:c2023326-2023223 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT46693 NZ_CP007594:2023185-2023456 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
