Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1181040..1181184 | Replicon | chromosome |
| Accession | NZ_CP007546 | ||
| Organism | Enterobacter asburiae L1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1181075..1181178 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1181040..1181184 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DI57_RS05565 | 1177524..1178186 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| DI57_RS05570 | 1178211..1178861 | - | 651 | WP_029740943.1 | carbon-nitrogen hydrolase family protein | - |
| DI57_RS05575 | 1178972..1179202 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| DI57_RS05580 | 1179339..1179710 | + | 372 | WP_029740944.1 | CopC domain-containing protein YobA | - |
| DI57_RS05585 | 1179712..1180581 | + | 870 | WP_029740945.1 | copper homeostasis membrane protein CopD | - |
| DI57_RS05590 | 1180598..1180936 | + | 339 | WP_029740946.1 | YebY family protein | - |
| - | 1181040..1181184 | - | 145 | - | - | Antitoxin |
| - | 1181075..1181178 | + | 104 | - | - | Toxin |
| DI57_RS05595 | 1181376..1182272 | - | 897 | WP_029740947.1 | benzoate transporter | - |
| DI57_RS05600 | 1182446..1183387 | - | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| DI57_RS05605 | 1183554..1184198 | + | 645 | WP_029741987.1 | protein-serine/threonine phosphatase | - |
| DI57_RS05610 | 1184233..1184472 | - | 240 | WP_008500472.1 | YebV family protein | - |
| DI57_RS05615 | 1184579..1186027 | - | 1449 | WP_196230760.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46604 NZ_CP007546:1181075-1181178 [Enterobacter asburiae L1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT46604 NZ_CP007546:c1181184-1181040 [Enterobacter asburiae L1]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
