Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052622..2052890 | Replicon | chromosome |
| Accession | NZ_CP007391 | ||
| Organism | Escherichia coli strain ST540 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2052749..2052852 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052622..2052890 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF61_RS10255 | 2049344..2050006 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CF61_RS10260 | 2050030..2050686 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CF61_RS10265 | 2050788..2050877 | - | 90 | Protein_1936 | DNA polymerase III subunit theta | - |
| CF61_RS10270 | 2050988..2051362 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| CF61_RS10275 | 2051366..2052238 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| CF61_RS10280 | 2052251..2052592 | + | 342 | WP_001515445.1 | YebY family protein | - |
| - | 2052622..2052890 | - | 269 | - | - | Antitoxin |
| - | 2052749..2052852 | + | 104 | - | - | Toxin |
| CF61_RS10290 | 2052987..2053643 | + | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| CF61_RS10295 | 2053644..2053835 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CF61_RS10300 | 2053940..2054176 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CF61_RS10305 | 2054294..2055733 | - | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46300 NZ_CP007391:2052749-2052852 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT46300 NZ_CP007391:c2052890-2052622 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
