Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1952835..1953103 | Replicon | chromosome |
| Accession | NZ_CP007390 | ||
| Organism | Escherichia coli strain ST540 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1952962..1953065 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1952835..1953103 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF57_RS09715 | 1949557..1950219 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CF57_RS09720 | 1950243..1950899 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CF57_RS09725 | 1951001..1951090 | - | 90 | Protein_1844 | DNA polymerase III subunit theta | - |
| CF57_RS09730 | 1951201..1951575 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| CF57_RS09735 | 1951579..1952451 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| CF57_RS09740 | 1952464..1952805 | + | 342 | WP_001515445.1 | YebY family protein | - |
| - | 1952835..1953103 | - | 269 | - | - | Antitoxin |
| - | 1952962..1953065 | + | 104 | - | - | Toxin |
| CF57_RS09750 | 1953200..1953856 | + | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| CF57_RS09755 | 1953857..1954048 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CF57_RS09760 | 1954153..1954389 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CF57_RS09765 | 1954507..1955946 | - | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1915501..1968941 | 53440 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46277 NZ_CP007390:1952962-1953065 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT46277 NZ_CP007390:c1953103-1952835 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
