Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1010316..1010584 | Replicon | chromosome |
| Accession | NZ_CP007275 | ||
| Organism | Escherichia coli strain O18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1010354..1010456 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1010316..1010584 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMECO18_RS05315 | 1007473..1008912 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NMECO18_RS05320 | 1009030..1009266 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| NMECO18_RS05325 | 1009371..1009562 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NMECO18_RS05330 | 1009563..1010219 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1010316..1010584 | + | 269 | - | - | Antitoxin |
| - | 1010354..1010456 | - | 103 | - | - | Toxin |
| NMECO18_RS05340 | 1010614..1010955 | - | 342 | WP_000984819.1 | YebY family protein | - |
| NMECO18_RS05345 | 1010968..1011840 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| NMECO18_RS05350 | 1011844..1012218 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NMECO18_RS05355 | 1012357..1012587 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NMECO18_RS05360 | 1012689..1013345 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| NMECO18_RS05365 | 1013368..1014030 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T46248 NZ_CP007275:c1010456-1010354 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT46248 NZ_CP007275:1010316-1010584 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
