Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977757..1977923 | Replicon | chromosome |
| Accession | NZ_CP007215 | ||
| Organism | Kosakonia sacchari SP1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977816..1977919 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977757..1977923 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C813_RS32385 | 1972956..1975031 | + | 2076 | WP_017456947.1 | oligopeptidase B | - |
| C813_RS32390 | 1975013..1975675 | - | 663 | WP_017456948.1 | exodeoxyribonuclease X | - |
| C813_RS32395 | 1975687..1975917 | - | 231 | WP_017456949.1 | DNA polymerase III subunit theta | - |
| C813_RS32400 | 1976055..1976429 | + | 375 | WP_017456950.1 | CopC domain-containing protein YobA | - |
| C813_RS32405 | 1976433..1977302 | + | 870 | WP_017456951.1 | copper homeostasis membrane protein CopD | - |
| C813_RS32410 | 1977321..1977659 | + | 339 | WP_025263575.1 | YebY family protein | - |
| - | 1977757..1977923 | - | 167 | - | - | Antitoxin |
| - | 1977816..1977919 | + | 104 | - | - | Toxin |
| C813_RS32415 | 1978630..1978926 | + | 297 | WP_017456954.1 | hypothetical protein | - |
| C813_RS32420 | 1979220..1980167 | - | 948 | WP_017456955.1 | VirK/YbjX family protein | - |
| C813_RS32425 | 1980343..1980987 | + | 645 | WP_017456956.1 | protein-serine/threonine phosphatase | - |
| C813_RS32430 | 1980988..1981179 | - | 192 | WP_017456957.1 | YebW family protein | - |
| C813_RS32435 | 1981285..1981524 | - | 240 | WP_017456958.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46173 NZ_CP007215:1977816-1977919 [Kosakonia sacchari SP1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT46173 NZ_CP007215:c1977923-1977757 [Kosakonia sacchari SP1]
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
