Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PanAT/DUF4065(antitoxin)
Location 248165..249571 Replicon chromosome
Accession NZ_CP007212
Organism Burkholderia plantarii strain ATCC 43733

Toxin (Protein)


Gene name panT Uniprot ID -
Locus tag bpln_RS34975 Protein ID WP_148653920.1
Coordinates 248165..249100 (-) Length 312 a.a.

Antitoxin (Protein)


Gene name panA Uniprot ID -
Locus tag bpln_RS33485 Protein ID WP_082465319.1
Coordinates 249116..249571 (-) Length 152 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
bpln_RS33480 247952..248065 - 114 WP_082465162.1 type II toxin-antitoxin system RelE/ParE family toxin -
bpln_RS34975 248165..249100 - 936 WP_148653920.1 hypothetical protein Toxin
bpln_RS33485 249116..249571 - 456 WP_082465319.1 SocA family protein Antitoxin
bpln_RS01015 250106..250852 - 747 WP_055137899.1 SDR family oxidoreductase -
bpln_RS01020 251170..251865 + 696 WP_055137900.1 M15 family metallopeptidase -
bpln_RS01025 252005..254317 + 2313 WP_055137901.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Antitoxin SocA-like, Panacea domain

(29-125)


Sequences

Toxin        


Download         Length: 312 a.a.        Molecular weight: 34539.99 Da        Isoelectric Point: 5.1053

>T46164 WP_148653920.1 NZ_CP007212:c249100-248165 [Burkholderia plantarii]
VPDPEEKNGLLQDGLSVSDIRIVETQATVPQPDESGFVADSPRHAEYEDRIVAFVDVLGFKDIIFKSAGKPDLVRKIHHA
LTVSNDAWAEVFAKEVGLDMTANDFEDRMTSFSDCVVISVKPDIREIGLLVYIIFRICRQLLMAGFLSRGGVAKGLLYHE
DGATSGNSGAPMVFGPAFVNAYLFESTHADGPRVILENSVREHIRRKCLQMPETKLTAFLNTHIKRAEDGPAYIDIFADF
GANDYYETAPDVSSEIETIHGHLCAALDQTADRPLHFKKNAQLARQFNHAVERVGRVDFHIDGDRLPTRDS

Download         Length: 936 bp

>T46164 NZ_CP007212:c249100-248165 [Burkholderia plantarii]
GTGCCCGACCCAGAAGAAAAAAACGGCCTTCTGCAGGATGGCCTCAGCGTTTCGGACATCCGGATCGTTGAAACGCAGGC
GACAGTGCCGCAGCCAGACGAGTCCGGGTTCGTCGCGGACTCTCCACGGCACGCTGAATACGAGGATCGAATCGTTGCGT
TCGTCGACGTACTCGGATTTAAAGACATCATCTTCAAATCTGCCGGAAAGCCGGATCTCGTCCGGAAAATTCATCATGCG
TTGACAGTTAGTAACGATGCATGGGCAGAGGTATTTGCGAAGGAAGTTGGCTTGGACATGACGGCCAACGACTTCGAAGA
TCGGATGACTTCATTTTCCGATTGCGTCGTCATATCGGTAAAGCCGGACATTCGCGAGATCGGACTTCTCGTCTATATCA
TCTTCAGGATCTGTCGACAGTTATTGATGGCGGGCTTCCTTAGCCGTGGCGGAGTCGCCAAGGGGCTGCTGTACCACGAG
GACGGCGCGACATCGGGTAACTCTGGCGCACCCATGGTATTTGGTCCCGCGTTTGTGAACGCCTATCTTTTCGAGTCAAC
CCACGCAGATGGCCCCCGAGTCATCTTGGAAAATTCTGTTCGGGAACATATCAGAAGAAAATGCTTACAGATGCCCGAAA
CCAAGTTAACAGCTTTTCTGAACACGCACATTAAACGGGCGGAAGACGGCCCCGCTTATATAGACATATTCGCAGACTTC
GGCGCCAACGATTATTACGAAACAGCTCCAGACGTTTCGTCAGAAATCGAAACGATTCACGGGCATTTGTGTGCTGCTCT
AGATCAAACTGCCGATCGACCGCTACATTTCAAGAAAAACGCACAGCTCGCGCGTCAGTTCAATCACGCGGTCGAACGGG
TGGGGCGTGTGGATTTTCATATTGACGGCGATCGTCTGCCTACGCGCGACTCTTAA

Antitoxin


Download         Length: 152 a.a.        Molecular weight: 16424.84 Da        Isoelectric Point: 7.0602

>AT46164 WP_082465319.1 NZ_CP007212:c249571-249116 [Burkholderia plantarii]
MTVSALQLAGEIIRRSGARGRLLTNLSVQKLAYFCHGWHLALRGAPLVDENFAAWKFGPVLPSVYHKLKVFSSNPIPPSH
PLVVAAGGDILDNDSGQIVDKVLELYGGYTGAQLVDMSHVANGPWAEAWAAGSDEMEDVRIQAYFKSLIKH

Download         Length: 456 bp

>AT46164 NZ_CP007212:c249571-249116 [Burkholderia plantarii]
ATGACGGTTTCAGCATTGCAACTCGCCGGCGAGATCATCCGTCGATCGGGCGCGCGCGGCCGTTTGTTGACTAATTTGTC
GGTCCAGAAGCTCGCCTATTTCTGCCACGGATGGCATTTGGCACTTAGGGGTGCTCCTTTGGTCGACGAGAACTTCGCCG
CGTGGAAGTTTGGTCCGGTTTTGCCGAGCGTTTATCATAAATTGAAGGTGTTCTCGTCGAACCCGATTCCGCCGTCGCAT
CCGTTGGTTGTGGCTGCTGGCGGCGACATCTTGGATAACGATTCCGGCCAAATCGTAGATAAAGTGCTCGAACTATATGG
CGGCTACACGGGCGCACAGCTCGTGGATATGTCGCATGTTGCCAATGGTCCTTGGGCGGAAGCGTGGGCGGCCGGTTCTG
ACGAGATGGAAGACGTGCGCATTCAAGCTTATTTCAAGTCGCTAATTAAGCATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References