Detailed information of TA system TA046103

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapB(antitoxin)
• Location: 1733308..1733888
• Replicon: chromosome
• Accession: NZ_CP007139
• Organism: Fimbriimonas ginsengisoli Gsoil 348

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: OP10G_RS07910
• Protein ID: WP_025226428.1
• Coordinates: 1733308..1733688 (-)
• Length: 127 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: OP10G_RS25720
• Protein ID: WP_084178901.1
• Coordinates: 1733685..1733888 (-)
• Length: 68 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
OP10G_RS07900	1729572..1731758	+	2187	WP_025226430.1	hypothetical protein	-
OP10G_RS07905	1732071..1733147	-	1077	WP_144241048.1	glycosyltransferase family 4 protein	-
OP10G_RS07910	1733308..1733688	-	381	WP_025226428.1	PIN domain-containing protein	Toxin
OP10G_RS25720	1733685..1733888	-	204	WP_084178901.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
OP10G_RS07915	1733937..1734689	-	753	WP_025226427.1	phytanoyl-CoA dioxygenase family protein	-
OP10G_RS07920	1734781..1735806	+	1026	WP_025226426.1	UDP-glucose--hexose-1-phosphate uridylyltransferase	-
OP10G_RS07925	1735835..1736704	+	870	WP_025226425.1	alpha/beta hydrolase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (3-116)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-44)

Sequences

Toxin

Protein

• Length: 127 a.a.
• Molecular weight: 14298.52 Da
• Isoelectric Point: 5.9799

>T46103 WP_025226428.1 NZ_CP007139:c1733688-1733308 [Fimbriimonas ginsengisoli Gsoil 348]
MTVLVDTSVWIRFLSNKPPYADELDHLLAEGLVVGHDFVFGELLIGDVGGRLKLLDDYEKIGRASMVSHDAIVRFVRERK
LHGRGVGWIDIHLLASAKVDGLLLWTADPRFDQMAREFGIAYYMRD

Nucleotide

• Length: 381 bp

>T46103 NZ_CP007139:c1733688-1733308 [Fimbriimonas ginsengisoli Gsoil 348]
ATGACCGTATTAGTTGACACCAGCGTTTGGATTAGGTTCTTGTCAAACAAGCCTCCCTACGCCGACGAATTGGACCATCT
CTTGGCGGAGGGACTTGTCGTCGGTCACGACTTCGTCTTTGGTGAACTGCTCATTGGTGATGTCGGTGGCCGGCTCAAGC
TGTTAGACGATTACGAGAAGATTGGCCGAGCTTCGATGGTCTCTCACGACGCCATCGTGCGATTTGTTCGCGAACGGAAG
CTACACGGTAGAGGAGTGGGTTGGATAGACATTCATCTCCTCGCTTCTGCGAAGGTAGATGGATTGCTGCTCTGGACTGC
CGATCCTCGATTTGACCAAATGGCGCGGGAATTTGGAATTGCTTACTATATGCGCGACTAG

Antitoxin

Protein

• Length: 68 a.a.
• Molecular weight: 7508.55 Da
• Isoelectric Point: 10.9753

>AT46103 WP_084178901.1 NZ_CP007139:c1733888-1733685 [Fimbriimonas ginsengisoli Gsoil 348]
MKKTLNIDPILLSEARRASRAASDTEAVRLGLEALVRHEAYQRLRSLRGSEPQAKDVPRRREAPAGE

Nucleotide

• Length: 204 bp

>AT46103 NZ_CP007139:c1733888-1733685 [Fimbriimonas ginsengisoli Gsoil 348]
ATGAAGAAGACTCTGAACATCGACCCGATCCTCCTTTCTGAGGCTCGCCGAGCTTCGCGAGCGGCAAGCGATACAGAGGC
GGTGCGGCTTGGCCTTGAAGCGTTGGTGCGTCACGAGGCGTACCAACGACTGAGATCTCTTCGTGGCTCGGAACCTCAGG
CGAAAGACGTGCCACGCCGGCGTGAGGCTCCTGCCGGCGAATGA