Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2301346..2301614 | Replicon | chromosome |
| Accession | NZ_CP007136 | ||
| Organism | Escherichia coli O145:H28 str. RM12581 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2301384..2301487 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2301346..2301614 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM12581_RS11730 | 2298503..2299942 | + | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECRM12581_RS11735 | 2300060..2300296 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECRM12581_RS11740 | 2300401..2300592 | + | 192 | WP_001313035.1 | YebW family protein | - |
| ECRM12581_RS11745 | 2300593..2301249 | - | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| - | 2301346..2301614 | + | 269 | - | - | Antitoxin |
| - | 2301384..2301487 | - | 104 | - | - | Toxin |
| ECRM12581_RS11755 | 2301644..2301985 | - | 342 | WP_000976475.1 | YebY family protein | - |
| ECRM12581_RS11760 | 2301998..2302870 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| ECRM12581_RS11765 | 2302874..2303248 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| ECRM12581_RS11770 | 2303387..2303617 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECRM12581_RS11775 | 2303719..2304375 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| ECRM12581_RS11780 | 2304399..2305061 | + | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46079 NZ_CP007136:c2301487-2301384 [Escherichia coli O145:H28 str. RM12581]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT46079 NZ_CP007136:2301346-2301614 [Escherichia coli O145:H28 str. RM12581]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
