Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4052952..4053073 | Replicon | chromosome |
| Accession | NZ_CP007044 | ||
| Organism | Chania multitudinisentens RB-25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4052956..4053049 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4052952..4053073 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Z042_RS17865 | 4047965..4048657 | + | 693 | WP_024910255.1 | hypothetical protein | - |
| Z042_RS17870 | 4048654..4049223 | + | 570 | WP_024910254.1 | hypothetical protein | - |
| Z042_RS17875 | 4049216..4050046 | + | 831 | WP_024910253.1 | DNA adenine methylase | - |
| Z042_RS17880 | 4050056..4050574 | + | 519 | WP_024910252.1 | hypothetical protein | - |
| Z042_RS26135 | 4051084..4051359 | + | 276 | Protein_3558 | hypothetical protein | - |
| Z042_RS17890 | 4051546..4051815 | + | 270 | WP_024910251.1 | excisionase | - |
| Z042_RS17895 | 4051790..4052875 | + | 1086 | WP_024910250.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 4052952..4053073 | + | 122 | - | - | Antitoxin |
| - | 4052956..4053049 | - | 94 | - | - | Toxin |
| Z042_RS17900 | 4053192..4053533 | - | 342 | WP_024910249.1 | YebY family protein | - |
| Z042_RS17905 | 4053584..4054465 | - | 882 | WP_024910248.1 | copper homeostasis membrane protein CopD | - |
| Z042_RS17910 | 4054469..4054852 | - | 384 | WP_154666993.1 | CopC domain-containing protein YobA | - |
| Z042_RS17915 | 4055150..4055662 | - | 513 | WP_024910246.1 | non-heme ferritin | - |
| Z042_RS17920 | 4056108..4056338 | + | 231 | WP_024910244.1 | DNA polymerase III subunit theta | - |
| Z042_RS17925 | 4056370..4057326 | - | 957 | WP_037405519.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3986959..4056338 | 69379 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T46005 NZ_CP007044:c4053049-4052956 [Chania multitudinisentens RB-25]
TAAGCCCTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCCTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 122 bp
>AT46005 NZ_CP007044:4052952-4053073 [Chania multitudinisentens RB-25]
AGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTATGCAGGGCTTACTCAGCCATGCACTTTAAGAGTAG
AGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTATGCAGGGCTTACTCAGCCATGCACTTTAAGAGTAG
