Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VagC |
| Location | 2385773..2386455 | Replicon | chromosome |
| Accession | NZ_CP007029 | ||
| Organism | Thioalkalivibrio paradoxus ARh | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | W0DJE5 |
| Locus tag | THITH_RS10755 | Protein ID | WP_006748088.1 |
| Coordinates | 2386039..2386455 (+) | Length | 139 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | W0DNZ8 |
| Locus tag | THITH_RS10750 | Protein ID | WP_006748089.1 |
| Coordinates | 2385773..2386042 (+) | Length | 90 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THITH_RS18795 | 2381326..2381481 | - | 156 | WP_198019442.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| THITH_RS17985 | 2381633..2381821 | - | 189 | WP_006748097.1 | hypothetical protein | - |
| THITH_RS18540 | 2381950..2382303 | - | 354 | WP_156925517.1 | hypothetical protein | - |
| THITH_RS18545 | 2382419..2383081 | - | 663 | WP_006748096.1 | hypothetical protein | - |
| THITH_RS10725 | 2383192..2383686 | + | 495 | WP_156925518.1 | hypothetical protein | - |
| THITH_RS10730 | 2383743..2384006 | - | 264 | WP_006748093.1 | Txe/YoeB family addiction module toxin | - |
| THITH_RS10735 | 2384003..2384245 | - | 243 | WP_006748092.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| THITH_RS10740 | 2384450..2384983 | - | 534 | WP_156925584.1 | Uma2 family endonuclease | - |
| THITH_RS18550 | 2385222..2385470 | - | 249 | WP_156925519.1 | type II toxin-antitoxin system VapC family toxin | - |
| THITH_RS18800 | 2385373..2385600 | - | 228 | WP_084222657.1 | DUF86 domain-containing protein | - |
| THITH_RS10750 | 2385773..2386042 | + | 270 | WP_006748089.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| THITH_RS10755 | 2386039..2386455 | + | 417 | WP_006748088.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| THITH_RS10760 | 2386498..2388336 | - | 1839 | WP_198019510.1 | NERD domain-containing protein | - |
| THITH_RS10765 | 2388655..2389014 | + | 360 | WP_006748086.1 | MbcA/ParS/Xre antitoxin family protein | - |
| THITH_RS10770 | 2389016..2389762 | + | 747 | WP_006748085.1 | RES family NAD+ phosphorylase | - |
| THITH_RS10775 | 2389983..2390159 | - | 177 | Protein_2160 | type II toxin-antitoxin system VapC family toxin | - |
| THITH_RS10780 | 2390192..2390467 | - | 276 | WP_006748083.1 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 2350521..2402746 | 52225 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 15187.64 Da Isoelectric Point: 7.5167
>T45954 WP_006748088.1 NZ_CP007029:2386039-2386455 [Thioalkalivibrio paradoxus ARh 1]
MTSVLHMLDTDTTSYIIKGHSPVLESRLAEIPPDRLCISAVTRAELMYGLKRLAPAHRLHLAVGQFLKIVRVPAWGADAA
DYYADIRYRLTRSGQPIGEMDMMIAAHALAVGAVLVSNNTGHFERIDAPLALTNWLHG
MTSVLHMLDTDTTSYIIKGHSPVLESRLAEIPPDRLCISAVTRAELMYGLKRLAPAHRLHLAVGQFLKIVRVPAWGADAA
DYYADIRYRLTRSGQPIGEMDMMIAAHALAVGAVLVSNNTGHFERIDAPLALTNWLHG
Download Length: 417 bp
>T45954 NZ_CP007029:2386039-2386455 [Thioalkalivibrio paradoxus ARh 1]
ATGACCAGCGTTTTGCACATGCTCGATACGGATACGACGAGCTACATCATCAAGGGGCATTCGCCGGTCCTCGAGTCGAG
ACTCGCCGAAATACCGCCCGATCGGCTATGCATATCCGCCGTCACACGCGCTGAGCTGATGTACGGCCTCAAGCGATTGG
CACCCGCTCATCGGCTGCATCTGGCGGTGGGCCAGTTTCTCAAGATCGTGCGCGTACCTGCCTGGGGCGCTGACGCGGCG
GACTACTACGCAGATATCCGATACCGGTTGACCCGATCGGGCCAGCCGATTGGTGAAATGGACATGATGATCGCCGCCCA
CGCGCTCGCTGTCGGCGCTGTATTGGTGAGCAACAACACCGGGCATTTCGAGCGCATCGACGCACCATTGGCGTTAACCA
ACTGGTTGCACGGGTAA
ATGACCAGCGTTTTGCACATGCTCGATACGGATACGACGAGCTACATCATCAAGGGGCATTCGCCGGTCCTCGAGTCGAG
ACTCGCCGAAATACCGCCCGATCGGCTATGCATATCCGCCGTCACACGCGCTGAGCTGATGTACGGCCTCAAGCGATTGG
CACCCGCTCATCGGCTGCATCTGGCGGTGGGCCAGTTTCTCAAGATCGTGCGCGTACCTGCCTGGGGCGCTGACGCGGCG
GACTACTACGCAGATATCCGATACCGGTTGACCCGATCGGGCCAGCCGATTGGTGAAATGGACATGATGATCGCCGCCCA
CGCGCTCGCTGTCGGCGCTGTATTGGTGAGCAACAACACCGGGCATTTCGAGCGCATCGACGCACCATTGGCGTTAACCA
ACTGGTTGCACGGGTAA
Antitoxin
Download Length: 90 a.a. Molecular weight: 10246.54 Da Isoelectric Point: 4.5370
>AT45954 WP_006748089.1 NZ_CP007029:2385773-2386042 [Thioalkalivibrio paradoxus ARh 1]
MTETRRVKLFKNGASQAVRLPAEFRFENEEIYATRDDASGDVVLSTRPGAKIWAEFFALIRTVDVPDDFMAERPMNIVPH
ERDLFQDEA
MTETRRVKLFKNGASQAVRLPAEFRFENEEIYATRDDASGDVVLSTRPGAKIWAEFFALIRTVDVPDDFMAERPMNIVPH
ERDLFQDEA
Download Length: 270 bp
>AT45954 NZ_CP007029:2385773-2386042 [Thioalkalivibrio paradoxus ARh 1]
ATGACTGAAACCCGACGTGTCAAGCTGTTCAAGAATGGTGCGAGTCAGGCTGTCCGCTTGCCGGCTGAGTTTCGTTTCGA
GAACGAGGAGATTTACGCCACCAGGGACGATGCGTCTGGCGACGTCGTGCTGTCCACCCGGCCAGGGGCCAAGATCTGGG
CTGAGTTTTTTGCACTGATACGGACCGTTGATGTCCCGGACGACTTCATGGCAGAGCGTCCAATGAACATCGTTCCCCAT
GAACGCGACCTCTTTCAGGACGAAGCATGA
ATGACTGAAACCCGACGTGTCAAGCTGTTCAAGAATGGTGCGAGTCAGGCTGTCCGCTTGCCGGCTGAGTTTCGTTTCGA
GAACGAGGAGATTTACGCCACCAGGGACGATGCGTCTGGCGACGTCGTGCTGTCCACCCGGCCAGGGGCCAAGATCTGGG
CTGAGTTTTTTGCACTGATACGGACCGTTGATGTCCCGGACGACTTCATGGCAGAGCGTCCAATGAACATCGTTCCCCAT
GAACGCGACCTCTTTCAGGACGAAGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|