Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-couple_hipB |
| Location | 460694..461286 | Replicon | chromosome |
| Accession | NZ_CP007029 | ||
| Organism | Thioalkalivibrio paradoxus ARh | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | W0DJV9 |
| Locus tag | THITH_RS02115 | Protein ID | WP_006746159.1 |
| Coordinates | 461071..461286 (-) | Length | 72 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | W0DJ69 |
| Locus tag | THITH_RS02110 | Protein ID | WP_006746160.1 |
| Coordinates | 460694..461074 (-) | Length | 127 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THITH_RS02075 | 455712..456620 | + | 909 | WP_006746167.1 | helix-turn-helix transcriptional regulator | - |
| THITH_RS02080 | 456755..457966 | + | 1212 | WP_006746166.1 | PQQ-dependent sugar dehydrogenase | - |
| THITH_RS02085 | 458134..458514 | + | 381 | WP_006746165.1 | nucleotidyltransferase domain-containing protein | - |
| THITH_RS02090 | 458504..458938 | + | 435 | WP_006746164.1 | DUF86 domain-containing protein | - |
| THITH_RS02095 | 459036..459422 | - | 387 | WP_006746163.1 | type II toxin-antitoxin system VapC family toxin | - |
| THITH_RS02100 | 459422..459652 | - | 231 | WP_006746162.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| THITH_RS02105 | 460022..460285 | + | 264 | WP_006746161.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| THITH_RS02110 | 460694..461074 | - | 381 | WP_006746160.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| THITH_RS02115 | 461071..461286 | - | 216 | WP_006746159.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| THITH_RS02120 | 461317..461517 | - | 201 | WP_006746158.1 | DUF2283 domain-containing protein | - |
| THITH_RS02125 | 461514..461774 | - | 261 | WP_084222598.1 | DUF4258 domain-containing protein | - |
| THITH_RS02130 | 461780..462226 | - | 447 | Protein_430 | hypothetical protein | - |
| THITH_RS02135 | 462236..462667 | - | 432 | WP_006746155.1 | type II toxin-antitoxin system VapC family toxin | - |
| THITH_RS02140 | 462664..462903 | - | 240 | WP_006746154.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| THITH_RS02145 | 463107..463500 | + | 394 | Protein_433 | nucleotidyltransferase domain-containing protein | - |
| THITH_RS02150 | 463782..464042 | + | 261 | WP_006746152.1 | prevent-host-death protein | - |
| THITH_RS02155 | 464048..464326 | + | 279 | WP_006746151.1 | type II toxin-antitoxin system YafQ family toxin | - |
| THITH_RS17390 | 464323..464523 | - | 201 | WP_198019487.1 | type II toxin-antitoxin system HicA family toxin | - |
| THITH_RS02160 | 464569..464799 | - | 231 | WP_006746150.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| THITH_RS17405 | 465285..465536 | + | 252 | WP_198019458.1 | BrnT family toxin | - |
| THITH_RS02165 | 465553..465738 | + | 186 | WP_198019488.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 72 a.a. Molecular weight: 8104.44 Da Isoelectric Point: 11.1141
>T45945 WP_006746159.1 NZ_CP007029:c461286-461071 [Thioalkalivibrio paradoxus ARh 1]
MKLPTGARQRIQEALRQLVADVDTARLDIKALQGRDGFRLRVGKWRVIYHRDDNAMIILVVDAGSRGDIFK
MKLPTGARQRIQEALRQLVADVDTARLDIKALQGRDGFRLRVGKWRVIYHRDDNAMIILVVDAGSRGDIFK
Download Length: 216 bp
>T45945 NZ_CP007029:c461286-461071 [Thioalkalivibrio paradoxus ARh 1]
ATGAAACTGCCGACGGGTGCACGACAGCGTATTCAGGAGGCGCTGAGACAACTGGTCGCAGACGTGGACACGGCCAGGCT
TGATATCAAGGCGCTGCAAGGCAGAGACGGATTCAGGCTCAGGGTCGGCAAATGGCGGGTGATCTACCACAGGGACGACA
ACGCGATGATCATCCTGGTCGTTGATGCGGGTTCGAGAGGAGACATTTTCAAATGA
ATGAAACTGCCGACGGGTGCACGACAGCGTATTCAGGAGGCGCTGAGACAACTGGTCGCAGACGTGGACACGGCCAGGCT
TGATATCAAGGCGCTGCAAGGCAGAGACGGATTCAGGCTCAGGGTCGGCAAATGGCGGGTGATCTACCACAGGGACGACA
ACGCGATGATCATCCTGGTCGTTGATGCGGGTTCGAGAGGAGACATTTTCAAATGA
Antitoxin
Download Length: 127 a.a. Molecular weight: 14142.11 Da Isoelectric Point: 4.4393
>AT45945 WP_006746160.1 NZ_CP007029:c461074-460694 [Thioalkalivibrio paradoxus ARh 1]
MNAQVQIIERDGQPEYAVVPIETYRRLLALAEDMEDIRAYDRAMAEINRGEDEILPTEVAERFLNGATQPLRIWREYRGL
TQQKLADAAGVGKPYISQIEAGKKQPTVGVLQALSRALAVDMEDLV
MNAQVQIIERDGQPEYAVVPIETYRRLLALAEDMEDIRAYDRAMAEINRGEDEILPTEVAERFLNGATQPLRIWREYRGL
TQQKLADAAGVGKPYISQIEAGKKQPTVGVLQALSRALAVDMEDLV
Download Length: 381 bp
>AT45945 NZ_CP007029:c461074-460694 [Thioalkalivibrio paradoxus ARh 1]
ATGAATGCCCAGGTACAGATCATCGAGCGGGACGGGCAGCCGGAGTACGCGGTGGTGCCCATCGAAACCTATCGCCGATT
GCTGGCGCTGGCCGAGGACATGGAGGATATCCGAGCCTACGATCGCGCCATGGCGGAGATCAACCGGGGCGAGGACGAGA
TATTGCCCACCGAGGTAGCCGAACGATTCCTGAACGGGGCAACCCAGCCGTTGCGGATCTGGCGGGAGTATCGCGGCCTG
ACCCAACAAAAGCTTGCCGACGCCGCCGGAGTCGGCAAGCCCTACATCTCGCAAATCGAAGCGGGTAAGAAGCAGCCCAC
TGTCGGGGTGTTGCAAGCATTGTCACGCGCACTGGCGGTGGACATGGAAGACCTGGTTTGA
ATGAATGCCCAGGTACAGATCATCGAGCGGGACGGGCAGCCGGAGTACGCGGTGGTGCCCATCGAAACCTATCGCCGATT
GCTGGCGCTGGCCGAGGACATGGAGGATATCCGAGCCTACGATCGCGCCATGGCGGAGATCAACCGGGGCGAGGACGAGA
TATTGCCCACCGAGGTAGCCGAACGATTCCTGAACGGGGCAACCCAGCCGTTGCGGATCTGGCGGGAGTATCGCGGCCTG
ACCCAACAAAAGCTTGCCGACGCCGCCGGAGTCGGCAAGCCCTACATCTCGCAAATCGAAGCGGGTAAGAAGCAGCCCAC
TGTCGGGGTGTTGCAAGCATTGTCACGCGCACTGGCGGTGGACATGGAAGACCTGGTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|