Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN-PHD |
| Location | 459036..459652 | Replicon | chromosome |
| Accession | NZ_CP007029 | ||
| Organism | Thioalkalivibrio paradoxus ARh | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | W0DF65 |
| Locus tag | THITH_RS02095 | Protein ID | WP_006746163.1 |
| Coordinates | 459036..459422 (-) | Length | 129 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | L0DRJ8 |
| Locus tag | THITH_RS02100 | Protein ID | WP_006746162.1 |
| Coordinates | 459422..459652 (-) | Length | 77 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THITH_RS02070 | 454872..455708 | + | 837 | WP_198019457.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| THITH_RS02075 | 455712..456620 | + | 909 | WP_006746167.1 | helix-turn-helix transcriptional regulator | - |
| THITH_RS02080 | 456755..457966 | + | 1212 | WP_006746166.1 | PQQ-dependent sugar dehydrogenase | - |
| THITH_RS02085 | 458134..458514 | + | 381 | WP_006746165.1 | nucleotidyltransferase domain-containing protein | - |
| THITH_RS02090 | 458504..458938 | + | 435 | WP_006746164.1 | DUF86 domain-containing protein | - |
| THITH_RS02095 | 459036..459422 | - | 387 | WP_006746163.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| THITH_RS02100 | 459422..459652 | - | 231 | WP_006746162.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| THITH_RS02105 | 460022..460285 | + | 264 | WP_006746161.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| THITH_RS02110 | 460694..461074 | - | 381 | WP_006746160.1 | helix-turn-helix transcriptional regulator | - |
| THITH_RS02115 | 461071..461286 | - | 216 | WP_006746159.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| THITH_RS02120 | 461317..461517 | - | 201 | WP_006746158.1 | DUF2283 domain-containing protein | - |
| THITH_RS02125 | 461514..461774 | - | 261 | WP_084222598.1 | DUF4258 domain-containing protein | - |
| THITH_RS02130 | 461780..462226 | - | 447 | Protein_430 | hypothetical protein | - |
| THITH_RS02135 | 462236..462667 | - | 432 | WP_006746155.1 | type II toxin-antitoxin system VapC family toxin | - |
| THITH_RS02140 | 462664..462903 | - | 240 | WP_006746154.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| THITH_RS02145 | 463107..463500 | + | 394 | Protein_433 | nucleotidyltransferase domain-containing protein | - |
| THITH_RS02150 | 463782..464042 | + | 261 | WP_006746152.1 | prevent-host-death protein | - |
| THITH_RS02155 | 464048..464326 | + | 279 | WP_006746151.1 | type II toxin-antitoxin system YafQ family toxin | - |
| THITH_RS17390 | 464323..464523 | - | 201 | WP_198019487.1 | type II toxin-antitoxin system HicA family toxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 129 a.a. Molecular weight: 14367.41 Da Isoelectric Point: 6.2156
>T45944 WP_006746163.1 NZ_CP007029:c459422-459036 [Thioalkalivibrio paradoxus ARh 1]
VRLVLDTHALLWWFTNDARLSAKAHEVIGDLENTVLVSAASAWEIATKHRLGKLEIGSEVLRRFDELITADGFTHLAVNY
RQAIHAGAYTVDHRDPFDRILAAQAELEQVPLVTADPALRAFPVRCIW
VRLVLDTHALLWWFTNDARLSAKAHEVIGDLENTVLVSAASAWEIATKHRLGKLEIGSEVLRRFDELITADGFTHLAVNY
RQAIHAGAYTVDHRDPFDRILAAQAELEQVPLVTADPALRAFPVRCIW
Download Length: 387 bp
>T45944 NZ_CP007029:c459422-459036 [Thioalkalivibrio paradoxus ARh 1]
GTGCGACTCGTGCTCGATACTCATGCGCTGCTTTGGTGGTTCACAAACGACGCGCGGCTGTCTGCAAAGGCTCACGAGGT
AATTGGGGACCTGGAGAATACCGTGCTCGTGAGTGCCGCCAGCGCATGGGAGATTGCCACCAAGCATCGCTTGGGAAAAC
TCGAAATCGGCAGCGAGGTTCTCCGGCGATTCGATGAACTGATCACGGCGGACGGCTTCACCCATCTGGCCGTCAACTAC
AGGCAAGCCATCCATGCCGGGGCTTATACGGTGGACCACCGCGATCCCTTCGACCGGATATTGGCCGCCCAGGCCGAGCT
CGAACAGGTTCCCCTCGTAACTGCCGATCCAGCACTGCGGGCATTTCCGGTACGGTGCATCTGGTAG
GTGCGACTCGTGCTCGATACTCATGCGCTGCTTTGGTGGTTCACAAACGACGCGCGGCTGTCTGCAAAGGCTCACGAGGT
AATTGGGGACCTGGAGAATACCGTGCTCGTGAGTGCCGCCAGCGCATGGGAGATTGCCACCAAGCATCGCTTGGGAAAAC
TCGAAATCGGCAGCGAGGTTCTCCGGCGATTCGATGAACTGATCACGGCGGACGGCTTCACCCATCTGGCCGTCAACTAC
AGGCAAGCCATCCATGCCGGGGCTTATACGGTGGACCACCGCGATCCCTTCGACCGGATATTGGCCGCCCAGGCCGAGCT
CGAACAGGTTCCCCTCGTAACTGCCGATCCAGCACTGCGGGCATTTCCGGTACGGTGCATCTGGTAG
Antitoxin
Download Length: 77 a.a. Molecular weight: 8558.68 Da Isoelectric Point: 6.2234
>AT45944 WP_006746162.1 NZ_CP007029:c459652-459422 [Thioalkalivibrio paradoxus ARh 1]
MSTTVNVHEAKTHLSRLLKRAHDGEEIILAKSGRPYARLVPLESAPPQRQPGRVEGRVEDAFFDPLPEDELAAWEK
MSTTVNVHEAKTHLSRLLKRAHDGEEIILAKSGRPYARLVPLESAPPQRQPGRVEGRVEDAFFDPLPEDELAAWEK
Download Length: 231 bp
>AT45944 NZ_CP007029:c459652-459422 [Thioalkalivibrio paradoxus ARh 1]
ATGAGCACCACGGTCAACGTACACGAAGCGAAAACACATCTGTCGCGCCTGTTGAAACGCGCGCATGACGGCGAGGAGAT
CATCCTGGCCAAGTCCGGCCGCCCTTATGCGCGCCTCGTTCCTTTGGAGTCCGCCCCGCCGCAGCGCCAGCCCGGGCGTG
TGGAGGGCCGGGTCGAAGACGCTTTCTTCGATCCCTTGCCAGAGGATGAACTCGCCGCGTGGGAGAAGTAG
ATGAGCACCACGGTCAACGTACACGAAGCGAAAACACATCTGTCGCGCCTGTTGAAACGCGCGCATGACGGCGAGGAGAT
CATCCTGGCCAAGTCCGGCCGCCCTTATGCGCGCCTCGTTCCTTTGGAGTCCGCCCCGCCGCAGCGCCAGCCCGGGCGTG
TGGAGGGCCGGGTCGAAGACGCTTTCTTCGATCCCTTGCCAGAGGATGAACTCGCCGCGTGGGAGAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|