Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995299..1995444 | Replicon | chromosome |
| Accession | NZ_CP006918 | ||
| Organism | Klebsiella pneumoniae 30684/NJST258_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995335..1995437 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995299..1995444 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPNJ2_RS09915 | 1990429..1992489 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KPNJ2_RS09920 | 1992493..1993152 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KPNJ2_RS09925 | 1993231..1993461 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KPNJ2_RS09930 | 1993574..1993948 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KPNJ2_RS09935 | 1993952..1994821 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KPNJ2_RS09940 | 1994838..1995176 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1995299..1995444 | - | 146 | - | - | Antitoxin |
| - | 1995335..1995437 | + | 103 | - | - | Toxin |
| KPNJ2_RS29075 | 1995812..1995955 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KPNJ2_RS09950 | 1996060..1997028 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KPNJ2_RS09955 | 1997185..1997838 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KPNJ2_RS09960 | 1997835..1998026 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KPNJ2_RS09965 | 1998124..1998363 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KPNJ2_RS09970 | 1998479..1999912 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T45734 NZ_CP006918:1995335-1995437 [Klebsiella pneumoniae 30684/NJST258_2]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT45734 NZ_CP006918:c1995444-1995299 [Klebsiella pneumoniae 30684/NJST258_2]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
