Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 5099872..5100539 Replicon chromosome
Accession NZ_CP006857
Organism Xanthomonas citri subsp. citri A306

Toxin (Protein)


Gene name vapC Uniprot ID M4U0C6
Locus tag J151_RS22265 Protein ID WP_005916679.1
Coordinates 5100123..5100539 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4U000
Locus tag J151_RS22260 Protein ID WP_005916676.1
Coordinates 5099872..5100126 (+) Length 85 a.a.

Genomic Context

J151_RS22235J151_RS22240J151_RS22250J151_RS22255J151_RS22260J151_RS22265J151_RS22270J151_RS22280J151_RS22245J151_RS25235J151_RS25240J151_RS22275J151_RS24750
Location: 5095994..5096213 (220 bp)
Type: Others
Protein ID: Protein_4255
Location: 5096370..5097635 (1266 bp)
Type: Others
Protein ID: WP_015463799.1
Location: 5098427..5098633 (207 bp)
Type: Others
Protein ID: WP_003489327.1
Location: 5098620..5099726 (1107 bp)
Type: Others
Protein ID: WP_005916674.1
Location: 5099872..5100126 (255 bp)
Type: Antitoxin
Protein ID: WP_005916676.1
Location: 5100123..5100539 (417 bp)
Type: Toxin
Protein ID: WP_005916679.1
Location: 5101461..5103080 (1620 bp)
Type: Others
Protein ID: WP_015463800.1
Location: 5103898..5104329 (432 bp)
Type: Others
Protein ID: WP_005922907.1
Location: 5097661..5098188 (528 bp)
Type: Others
Protein ID: WP_005916668.1
Location: 5100661..5100864 (204 bp)
Type: Others
Protein ID: WP_125460668.1
Location: 5100992..5101204 (213 bp)
Type: Others
Protein ID: WP_015472901.1
Location: 5103184..5103582 (399 bp)
Type: Others
Protein ID: WP_004429277.1
Location: 5104358..5104684 (327 bp)
Type: Others
Protein ID: Protein_4267
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
J151_RS222355095994..5096213+220Protein_4255RNA 2'-phosphotransferase-
J151_RS222405096370..5097635+1266WP_015463799.1cardiolipin synthase B-
J151_RS222455097661..5098188-528WP_005916668.1hypothetical protein-
J151_RS222505098427..5098633+207WP_003489327.1hypothetical protein-
J151_RS222555098620..5099726+1107WP_005916674.1type II toxin-antitoxin system RelE/ParE family toxin-
J151_RS222605099872..5100126+255WP_005916676.1Arc family DNA-binding proteinAntitoxin
J151_RS222655100123..5100539+417WP_005916679.1type II toxin-antitoxin system VapC family toxinToxin
J151_RS252355100661..5100864-204WP_125460668.1hypothetical protein-
J151_RS252405100992..5101204-213WP_015472901.1hypothetical protein-
J151_RS222705101461..5103080+1620WP_015463800.1hypothetical protein-
J151_RS222755103184..5103582-399WP_004429277.1DUF2384 domain-containing protein-
J151_RS222805103898..5104329+432WP_005922907.1hypothetical protein-
J151_RS247505104358..5104684-327Protein_4267hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-39)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14795.09 Da        Isoelectric Point: 5.6920

>T45717 WP_005916679.1 NZ_CP006857:5100123-5100539 [Xanthomonas citri subsp. citri A306]
VILLDTNVISELWRPQPNPQVVAWIDAQAVETLFLSVVTVAELRFGIAVMPKGRKRSTLHARLEGEVLPLFDGRLLAFDL
DASHAFAALASKARTAGLTLGRADAYIAATAAAQGLTVATRDTAPFEAMALDVINPWS

Download         Length: 417 bp

>T45717 NZ_CP006857:5100123-5100539 [Xanthomonas citri subsp. citri A306]
GTGATCCTGCTCGATACCAATGTCATCTCCGAACTTTGGCGGCCTCAGCCTAATCCGCAGGTCGTCGCCTGGATCGATGC
ACAAGCTGTCGAGACACTGTTCCTGTCGGTCGTGACGGTGGCTGAACTCCGTTTCGGTATTGCCGTGATGCCCAAGGGCC
GAAAGCGATCCACCTTGCATGCTCGGTTGGAGGGCGAGGTATTGCCACTGTTCGACGGGCGCCTGCTCGCATTCGATCTG
GATGCATCACACGCATTTGCGGCGCTTGCATCGAAAGCCAGAACCGCAGGACTCACACTCGGGCGCGCCGATGCCTACAT
CGCTGCAACAGCAGCCGCGCAAGGATTGACCGTTGCCACTCGCGACACGGCACCATTCGAGGCGATGGCGTTAGACGTCA
TTAACCCTTGGAGTTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 8996.53 Da        Isoelectric Point: 11.3362

>AT45717 WP_005916676.1 NZ_CP006857:5099872-5100126 [Xanthomonas citri subsp. citri A306]
MPSFTVRNIPDDVHRAIRARAALHGRSTEAEIRAILELAAKPADRVKLGSLLVSIGRDAGLTAKEANAFDKLRGKAAIKP
IGLK

Download         Length: 255 bp

>AT45717 NZ_CP006857:5099872-5100126 [Xanthomonas citri subsp. citri A306]
ATGCCTTCTTTCACCGTCCGCAATATCCCAGACGACGTGCATCGCGCGATCCGCGCGCGGGCTGCACTTCATGGCCGCAG
CACCGAAGCGGAGATCCGCGCAATCCTTGAATTGGCGGCCAAACCCGCAGACCGGGTCAAACTCGGCTCACTGCTGGTGA
GCATCGGCCGCGACGCCGGCCTGACCGCAAAAGAGGCCAATGCCTTCGACAAGCTGCGCGGCAAGGCGGCGATCAAGCCG
ATCGGTCTGAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBM4U0C6

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A828YKJ0

References