Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 2561146..2561779 Replicon chromosome
Accession NZ_CP006857
Organism Xanthomonas citri subsp. citri A306

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag J151_RS11625 Protein ID WP_015463212.1
Coordinates 2561146..2561559 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4TWF0
Locus tag J151_RS11630 Protein ID WP_015463213.1
Coordinates 2561546..2561779 (-) Length 78 a.a.

Genomic Context

J151_RS11615J151_RS11620J151_RS11635J151_RS11645J151_RS11650J151_RS23725J151_RS11625J151_RS11630J151_RS11640
Location: 2556838..2559018 (2181 bp)
Type: Others
Protein ID: WP_011051394.1
Location: 2559227..2560741 (1515 bp)
Type: Others
Protein ID: WP_015463210.1
Location: 2562037..2563068 (1032 bp)
Type: Others
Protein ID: WP_040107627.1
Location: 2564051..2564626 (576 bp)
Type: Others
Protein ID: WP_011051400.1
Location: 2564607..2565656 (1050 bp)
Type: Others
Protein ID: WP_011051401.1
Location: 2560757..2561119 (363 bp)
Type: Others
Protein ID: WP_015463211.1
Location: 2561146..2561559 (414 bp)
Type: Toxin
Protein ID: WP_015463212.1
Location: 2561546..2561779 (234 bp)
Type: Antitoxin
Protein ID: WP_015463213.1
Location: 2563201..2563599 (399 bp)
Type: Others
Protein ID: WP_099521978.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
J151_RS116152556838..2559018+2181WP_011051394.1TonB-dependent siderophore receptor-
J151_RS116202559227..2560741+1515WP_015463210.1conjugal transfer protein TraG N-terminal domain-containing protein-
J151_RS237252560757..2561119-363WP_015463211.1DUF3742 family protein-
J151_RS116252561146..2561559-414WP_015463212.1PIN domain-containing proteinToxin
J151_RS116302561546..2561779-234WP_015463213.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
J151_RS116352562037..2563068+1032WP_040107627.1DUF4917 family protein-
J151_RS116402563201..2563599-399WP_099521978.1hypothetical protein-
J151_RS116452564051..2564626+576WP_011051400.1sigma-70 family RNA polymerase sigma factor-
J151_RS116502564607..2565656+1050WP_011051401.1FecR domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-119)

Antitoxin

SpoVT-AbrB domain

(5-45)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15221.65 Da        Isoelectric Point: 6.3225

>T45714 WP_015463212.1 NZ_CP006857:c2561559-2561146 [Xanthomonas citri subsp. citri A306]
MAAGKGKVFLDSNVVLYLLSEDAVKADGAEALLQRRPVISVQVLNEVTHVCVRKLKMGWDEVGQFLALVRSFCKIVPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYSEDMHHGLIIEESLSIRNPFNV

Download         Length: 414 bp

>T45714 NZ_CP006857:c2561559-2561146 [Xanthomonas citri subsp. citri A306]
ATGGCCGCGGGTAAGGGCAAAGTGTTTCTCGACAGCAACGTGGTGCTCTACCTGCTGTCGGAGGATGCGGTGAAGGCGGA
CGGCGCGGAGGCATTGCTGCAGCGCAGGCCCGTCATCAGTGTGCAGGTGCTCAATGAAGTGACCCACGTCTGCGTTCGCA
AGCTCAAGATGGGCTGGGACGAAGTCGGGCAGTTCCTTGCGTTGGTGCGATCGTTCTGCAAGATAGTGCCTCTGACGGTC
GATGTTCACGACCGTGCGCGCCAGCTGGCGGAGCGGCACCAATTGTCGTTCTACGACGCGTGCATCGTGGCGGCGGCCGC
CATCGAAGGGTGCCAGACCCTCTACTCCGAAGACATGCACCACGGCCTCATCATCGAAGAGAGCCTGTCGATTCGGAACC
CGTTCAACGTCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8663.97 Da        Isoelectric Point: 8.7848

>AT45714 WP_015463213.1 NZ_CP006857:c2561779-2561546 [Xanthomonas citri subsp. citri A306]
MQVAKWGNSLAVRLPSSLVEALELREGDDIEIVVDDPRLFAVRKKPGPEAMLERLRAFRGKLPADFKFNRDEANGRG

Download         Length: 234 bp

>AT45714 NZ_CP006857:c2561779-2561546 [Xanthomonas citri subsp. citri A306]
ATGCAAGTCGCGAAGTGGGGTAACAGCCTGGCGGTGCGCCTGCCGTCCAGTCTGGTGGAAGCGCTGGAACTGCGCGAGGG
CGACGACATCGAGATCGTCGTCGATGATCCGCGATTGTTCGCGGTGCGCAAGAAGCCGGGTCCGGAGGCCATGTTGGAGC
GGCTGCGTGCCTTCCGGGGCAAGTTGCCCGCAGATTTCAAGTTCAACCGGGACGAGGCCAATGGCCGCGGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4TWF0

References