Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4385088..4385920 | Replicon | chromosome |
| Accession | NZ_CP006834 | ||
| Organism | Escherichia coli APEC O2-211 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | APECO2_RS22935 | Protein ID | WP_047340816.1 |
| Coordinates | 4385546..4385920 (+) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | E3PJ72 |
| Locus tag | APECO2_RS22930 | Protein ID | WP_001278232.1 |
| Coordinates | 4385088..4385456 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APECO2_RS22890 | 4380931..4381611 | + | 681 | WP_001593697.1 | WYL domain-containing protein | - |
| APECO2_RS22895 | 4381759..4382436 | + | 678 | WP_001097306.1 | hypothetical protein | - |
| APECO2_RS22900 | 4382442..4382675 | + | 234 | WP_001278287.1 | DUF905 family protein | - |
| APECO2_RS22910 | 4382774..4383592 | + | 819 | WP_001234631.1 | DUF945 domain-containing protein | - |
| APECO2_RS22915 | 4383674..4384153 | + | 480 | WP_000860065.1 | antirestriction protein | - |
| APECO2_RS22920 | 4384165..4384641 | + | 477 | WP_001186710.1 | RadC family protein | - |
| APECO2_RS22925 | 4384704..4384925 | + | 222 | WP_000692303.1 | DUF987 domain-containing protein | - |
| APECO2_RS22930 | 4385088..4385456 | + | 369 | WP_001278232.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| APECO2_RS22935 | 4385546..4385920 | + | 375 | WP_047340816.1 | TA system toxin CbtA family protein | Toxin |
| APECO2_RS22940 | 4385917..4386405 | + | 489 | WP_000777541.1 | hypothetical protein | - |
| APECO2_RS22945 | 4386417..4386614 | + | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| APECO2_RS22950 | 4386711..4387280 | + | 570 | WP_001290247.1 | DUF4942 domain-containing protein | - |
| APECO2_RS22955 | 4387560..4388096 | - | 537 | WP_000942807.1 | GspM family type II secretion system protein YghD | - |
| APECO2_RS22960 | 4388098..4389276 | - | 1179 | WP_000097200.1 | type II secretion system protein GspL | - |
| APECO2_RS22965 | 4389273..4390250 | - | 978 | WP_039025811.1 | type II secretion system minor pseudopilin GspK | - |
| APECO2_RS22970 | 4390247..4390852 | - | 606 | WP_001318033.1 | type II secretion system minor pseudopilin GspJ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13976.95 Da Isoelectric Point: 7.8045
>T45703 WP_047340816.1 NZ_CP006834:4385546-4385920 [Escherichia coli APEC O2-211]
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKQ
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKQ
Download Length: 375 bp
>T45703 NZ_CP006834:4385546-4385920 [Escherichia coli APEC O2-211]
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGAGCTGCCCGTCTCCCGTCACCATCTGGCAGACTCTGCTCTC
CCGACTACTGGGCCAGCATTACGGCCTTACACTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACTTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCCGGAGAAACAATGA
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGAGCTGCCCGTCTCCCGTCACCATCTGGCAGACTCTGCTCTC
CCGACTACTGGGCCAGCATTACGGCCTTACACTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACTTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCCGGAGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13491.37 Da Isoelectric Point: 6.6290
>AT45703 WP_001278232.1 NZ_CP006834:4385088-4385456 [Escherichia coli APEC O2-211]
VSDALSGTMLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
VSDALSGTMLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
Download Length: 369 bp
>AT45703 NZ_CP006834:4385088-4385456 [Escherichia coli APEC O2-211]
GTGTCAGACGCACTCTCCGGGACAATGCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGTCTGACCTGCAAAGCTGACACTCTCGGTAGCGG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACGCACTCTCCGGGACAATGCTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGTCTGACCTGCAAAGCTGACACTCTCGGTAGCGG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|