Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3017776..3018044 | Replicon | chromosome |
| Accession | NZ_CP006834 | ||
| Organism | Escherichia coli APEC O2-211 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3017814..3017916 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3017776..3018044 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APECO2_RS15965 | 3014933..3016372 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| APECO2_RS15970 | 3016490..3016726 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| APECO2_RS15975 | 3016831..3017022 | + | 192 | WP_001317886.1 | YebW family protein | - |
| APECO2_RS15980 | 3017023..3017679 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 3017776..3018044 | + | 269 | - | - | Antitoxin |
| - | 3017814..3017916 | - | 103 | - | - | Toxin |
| APECO2_RS15985 | 3018074..3018415 | - | 342 | WP_000976472.1 | YebY family protein | - |
| APECO2_RS15990 | 3018428..3019300 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| APECO2_RS15995 | 3019304..3019678 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| APECO2_RS16000 | 3019817..3020047 | + | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| APECO2_RS16005 | 3020149..3020805 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| APECO2_RS16010 | 3020829..3021491 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T45691 NZ_CP006834:c3017916-3017814 [Escherichia coli APEC O2-211]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT45691 NZ_CP006834:3017776-3018044 [Escherichia coli APEC O2-211]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
