Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 820002..820270 | Replicon | chromosome |
| Accession | NZ_CP006830 | ||
| Organism | Escherichia coli APEC O18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 820040..820142 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 820002..820270 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APECO18_RS04405 | 817159..818598 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| APECO18_RS04410 | 818716..818952 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| APECO18_RS04415 | 819057..819248 | + | 192 | WP_001296140.1 | YebW family protein | - |
| APECO18_RS04420 | 819249..819905 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 820002..820270 | + | 269 | - | - | Antitoxin |
| - | 820040..820142 | - | 103 | - | - | Toxin |
| APECO18_RS04430 | 820300..820641 | - | 342 | WP_000984819.1 | YebY family protein | - |
| APECO18_RS04435 | 820654..821526 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| APECO18_RS04440 | 821530..821904 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| APECO18_RS04445 | 822043..822273 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| APECO18_RS04450 | 822375..823031 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| APECO18_RS04455 | 823054..823716 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T45655 NZ_CP006830:c820142-820040 [Escherichia coli APEC O18]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT45655 NZ_CP006830:820002-820270 [Escherichia coli APEC O18]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
