Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1387555..1387649 Replicon chromosome
Accession NZ_CP006792
Organism Yersinia pestis 2944

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1387556..1387649 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1387555..1387649 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M478_RS07670 1382748..1384826 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
M478_RS07675 1384826..1385986 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
M478_RS07680 1386518..1386976 + 459 WP_002211098.1 hypothetical protein -
M478_RS07685 1386970..1387296 + 327 WP_002211097.1 DUF1493 family protein -
- 1387555..1387649 + 95 - - Antitoxin
- 1387556..1387649 - 94 - - Toxin
M478_RS07695 1387819..1388160 - 342 WP_002211095.1 YebY family protein -
M478_RS07700 1388257..1389141 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
M478_RS07705 1389144..1389530 - 387 WP_002211093.1 CopC domain-containing protein YobA -
M478_RS07710 1389927..1390436 - 510 WP_002211092.1 non-heme ferritin -
M478_RS07715 1390837..1391067 + 231 WP_002211091.1 DNA polymerase III subunit theta -
M478_RS07720 1391127..1392077 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T45592 NZ_CP006792:c1387649-1387556 [Yersinia pestis 2944]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT45592 NZ_CP006792:1387555-1387649 [Yersinia pestis 2944]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References