Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1813335..1813429 Replicon chromosome
Accession NZ_CP006783
Organism Yersinia pestis 1412

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1813336..1813429 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1813335..1813429 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M479_RS09520 1808528..1810606 - 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -
M479_RS09525 1810606..1811766 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
M479_RS09530 1812298..1812756 + 459 WP_002211098.1 hypothetical protein -
M479_RS09535 1812750..1813076 + 327 WP_002211097.1 DUF1493 family protein -
- 1813335..1813429 + 95 - - Antitoxin
- 1813336..1813429 - 94 - - Toxin
M479_RS09545 1813599..1813940 - 342 WP_002211095.1 YebY family protein -
M479_RS09550 1814037..1814921 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
M479_RS09555 1814924..1815310 - 387 WP_002211093.1 CopC domain-containing protein YobA -
M479_RS09560 1815716..1816225 - 510 WP_002211092.1 non-heme ferritin -
M479_RS09565 1816626..1816856 + 231 WP_002211091.1 DNA polymerase III subunit theta -
M479_RS09570 1816916..1817866 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T45578 NZ_CP006783:c1813429-1813336 [Yersinia pestis 1412]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT45578 NZ_CP006783:1813335-1813429 [Yersinia pestis 1412]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References