Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicB-HicA
Location 1781332..1781978 Replicon chromosome
Accession NZ_CP006783
Organism Yersinia pestis 1412

Toxin (Protein)


Gene name hicA Uniprot ID A0A3G5L3F2
Locus tag M479_RS09385 Protein ID WP_002214976.1
Coordinates 1781332..1781514 (+) Length 61 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID A0A0U1R391
Locus tag M479_RS09390 Protein ID WP_002211129.1
Coordinates 1781559..1781978 (+) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M479_RS09350 1776718..1777188 + 471 WP_002227961.1 flagellar basal body-associated protein FliL -
M479_RS09355 1777194..1778195 + 1002 WP_002211135.1 flagellar motor switch protein FliM -
M479_RS09360 1778192..1778608 + 417 WP_011906247.1 flagellar motor switch protein FliN -
M479_RS09365 1778608..1779144 + 537 WP_002211133.1 flagellar biosynthetic protein FliO -
M479_RS09370 1779225..1779965 + 741 WP_002220494.1 flagellar type III secretion system pore protein FliP -
M479_RS09375 1780071..1780340 + 270 WP_002211131.1 flagellar biosynthesis protein FliQ -
M479_RS09380 1780343..1781125 + 783 WP_002211130.1 flagellar type III secretion system protein FliR -
M479_RS09385 1781332..1781514 + 183 WP_002214976.1 type II toxin-antitoxin system HicA family toxin Toxin
M479_RS09390 1781559..1781978 + 420 WP_002211129.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
M479_RS09395 1782236..1783195 - 960 WP_002211128.1 sugar kinase -
M479_RS09400 1783244..1784266 - 1023 WP_002214974.1 ABC transporter permease -
M479_RS09405 1784269..1785846 - 1578 WP_002211126.1 sugar ABC transporter ATP-binding protein -
M479_RS09410 1785912..1786907 - 996 WP_002211125.1 substrate-binding domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(4-59)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(4-131)


Sequences

Toxin        


Download         Length: 61 a.a.        Molecular weight: 6783.99 Da        Isoelectric Point: 10.8877

>T45577 WP_002214976.1 NZ_CP006783:1781332-1781514 [Yersinia pestis 1412]
VKSSELIKLLETNGWKLMRVKGSHHQFKHPDFAAVITVPHPKKDVKPGTLRQILKDANLS

Download         Length: 183 bp

>T45577 NZ_CP006783:1781332-1781514 [Yersinia pestis 1412]
GTGAAAAGTTCGGAGCTGATAAAACTGCTCGAAACAAATGGTTGGAAGTTGATGAGAGTTAAAGGCAGTCATCATCAATT
CAAACATCCTGATTTCGCGGCAGTCATAACAGTACCGCATCCCAAAAAGGATGTTAAACCGGGAACCCTCCGGCAAATTC
TGAAAGATGCAAACCTTAGTTAA

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15549.42 Da        Isoelectric Point: 4.7731

>AT45577 WP_002211129.1 NZ_CP006783:1781559-1781978 [Yersinia pestis 1412]
MAIYPAYVHVDNDGSASGYFPDVKGCIFAINAGEDLFAEASSALDAHFEALVSEGIEIPEAHDMPYHVYRNPCDYADGGQ
WYNVNIDMSKYDGKVERINVTLPHRLIHQIDTIVKVRPEYASRSNFLAEAARKELQKLA

Download         Length: 420 bp

>AT45577 NZ_CP006783:1781559-1781978 [Yersinia pestis 1412]
ATGGCTATCTATCCCGCCTATGTTCACGTTGATAATGATGGCTCGGCAAGCGGTTATTTCCCCGATGTCAAAGGCTGTAT
TTTTGCCATCAATGCCGGGGAGGATTTATTTGCAGAAGCATCAAGCGCCCTGGATGCACACTTTGAAGCTTTGGTGTCTG
AAGGTATCGAAATTCCTGAAGCTCATGACATGCCTTACCACGTTTACCGTAACCCATGCGATTACGCTGATGGCGGACAG
TGGTATAACGTGAATATTGATATGTCGAAATATGATGGAAAAGTTGAACGAATTAACGTCACTCTTCCGCACCGGCTGAT
TCATCAAATCGATACTATTGTTAAAGTGCGTCCCGAGTATGCCAGCCGAAGCAATTTTCTAGCCGAAGCAGCACGTAAAG
AATTACAGAAATTGGCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3G5L3F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0U1R391

References