Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3979945..3980039 Replicon chromosome
Accession NZ_CP006762
Organism Yersinia pestis 1413

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3979945..3980038 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3979945..3980039 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M480_RS19375 3975508..3976458 + 951 WP_002211090.1 prolyl aminopeptidase -
M480_RS19380 3976518..3976748 - 231 WP_002211091.1 DNA polymerase III subunit theta -
M480_RS19385 3977149..3977658 + 510 WP_002211092.1 non-heme ferritin -
M480_RS19390 3978064..3978450 + 387 WP_002211093.1 CopC domain-containing protein YobA -
M480_RS19395 3978453..3979337 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
M480_RS19400 3979434..3979775 + 342 WP_002211095.1 YebY family protein -
- 3979945..3980038 + 94 - - Toxin
- 3979945..3980039 - 95 - - Antitoxin
M480_RS19410 3980298..3980624 - 327 WP_002211097.1 DUF1493 family protein -
M480_RS19415 3980618..3981076 - 459 WP_002211098.1 hypothetical protein -
M480_RS19420 3981608..3982768 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
M480_RS19425 3982768..3984846 + 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T45563 NZ_CP006762:3979945-3980038 [Yersinia pestis 1413]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT45563 NZ_CP006762:c3980039-3979945 [Yersinia pestis 1413]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References