Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3268096..3268190 Replicon chromosome
Accession NZ_CP006758
Organism Yersinia pestis 1522

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3268097..3268190 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3268096..3268190 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M481_RS16240 3263289..3265367 - 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -
M481_RS16245 3265367..3266527 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
M481_RS16250 3267059..3267517 + 459 WP_002211098.1 hypothetical protein -
M481_RS16255 3267511..3267837 + 327 WP_002211097.1 DUF1493 family protein -
- 3268096..3268190 + 95 - - Antitoxin
- 3268097..3268190 - 94 - - Toxin
M481_RS16265 3268360..3268701 - 342 WP_002211095.1 YebY family protein -
M481_RS16270 3268798..3269682 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
M481_RS16275 3269685..3270071 - 387 WP_002211093.1 CopC domain-containing protein YobA -
M481_RS16280 3270477..3270986 - 510 WP_002211092.1 non-heme ferritin -
M481_RS16285 3271387..3271617 + 231 WP_002211091.1 DNA polymerase III subunit theta -
M481_RS16290 3271677..3272627 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T45548 NZ_CP006758:c3268190-3268097 [Yersinia pestis 1522]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT45548 NZ_CP006758:3268096-3268190 [Yersinia pestis 1522]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References