Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3138751..3138845 Replicon chromosome
Accession NZ_CP006754
Organism Yersinia pestis 3067

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3138751..3138844 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3138751..3138845 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M482_RS15645 3134314..3135264 + 951 WP_002211090.1 prolyl aminopeptidase -
M482_RS15650 3135324..3135554 - 231 WP_002211091.1 DNA polymerase III subunit theta -
M482_RS15655 3135955..3136464 + 510 WP_002211092.1 non-heme ferritin -
M482_RS15660 3136870..3137256 + 387 WP_002211093.1 CopC domain-containing protein YobA -
M482_RS15665 3137259..3138143 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
M482_RS15670 3138240..3138581 + 342 WP_002211095.1 YebY family protein -
- 3138751..3138844 + 94 - - Toxin
- 3138751..3138845 - 95 - - Antitoxin
M482_RS15680 3139104..3139430 - 327 WP_002211097.1 DUF1493 family protein -
M482_RS15685 3139424..3139882 - 459 WP_002211098.1 hypothetical protein -
M482_RS15690 3140414..3141574 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
M482_RS15695 3141574..3143652 + 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T45535 NZ_CP006754:3138751-3138844 [Yersinia pestis 3067]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT45535 NZ_CP006754:c3138845-3138751 [Yersinia pestis 3067]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References